Browse Element(s) Details


OsAffx.27020.1.S1_x_at

Description tigr:9633.m02356
TID=OsAffx.27020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2611011/11transposon protein, putative, Mutator sub-class
LOC_Os05g260402/11Pumilio-family RNA binding repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26049OsAffx.27019.1.S1_at11/115+15080388..15081350hypothetical protein
LOC_Os05g26060OsAffx.14835.1.S1_at11/115+15083568..15084648retrotransposon protein, putative, unclassified
LOC_Os05g26070Os.20593.1.S1_x_at11/115+15086368..15088379expressed protein
LOC_Os05g26070Os.20593.2.S1_at7/115+15086368..15088379expressed protein
LOC_Os05g26070Os.5199.2.S1_x_at2/115+15086368..15088379expressed protein
LOC_Os05g26080OsAffx.9860.1.S1_x_at1/115+15091764..15092511transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26090Os.46306.1.S1_x_at1/115+15093335..15094951transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26100Os.14491.2.S1_x_at3/115+15098259..15101825transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26100Os.47463.1.S1_x_at2/115+15098259..15101825transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26110OsAffx.27020.1.S1_x_at11/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26110OsAffx.15837.1.S1_at7/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26110Os.18826.1.S1_at1/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26120OsAffx.27021.1.S1_at10/115+15113432..15114646hypothetical protein
LOC_Os05g26130OsAffx.27022.1.S1_at11/115+15119046..15119306hypothetical protein
LOC_Os05g26140OsAffx.4436.1.S1_at11/115+15129309..15134345hypothetical protein
LOC_Os05g26140OsAffx.24130.1.S1_x_at2/115+15129309..15134345hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27020.1.S1_x_at--114--4231Chr05:15103450..15103514 (25 bp)
CCGATCGACTTAGCTAGCGACGTCG
LOC_Os05g26110
OsAffx.27020.1.S1_x_at--388--4051Chr05:15103451..15103515 (25 bp)
CGATCGACTTAGCTAGCGACGTCGA
LOC_Os05g26110
OsAffx.27020.1.S1_x_at--118--6391Chr05:15103452..15103516 (25 bp)
GATCGACTTAGCTAGCGACGTCGAC
LOC_Os05g26110
OsAffx.27020.1.S1_x_at--108--9371Chr05:15103454..15103518 (25 bp)
TCGACTTAGCTAGCGACGTCGACGA
LOC_Os05g26110
OsAffx.27020.1.S1_x_at--542--4091Chr05:15103455..15103519 (25 bp)
CGACTTAGCTAGCGACGTCGACGAC
LOC_Os05g26110
OsAffx.27020.1.S1_x_at--468--3952Chr05:15103531..15103555 (25 bp)
CGGCAAGGCGATATGGGATGATCTC
LOC_Os05g26110
OsAffx.27020.1.S1_x_at--51--6512Chr05:15103540..15103564 (25 bp)
GATATGGGATGATCTCGCTTCTGAA
LOC_Os05g26110
OsAffx.27020.1.S1_x_at--671--10111Chr05:15103542..15103566 (25 bp)
TATGGGATGATCTCGCTTCTGAAAT
LOC_Os05g26110
OsAffx.27020.1.S1_x_at--218--8851Chr05:15103549..15103573 (25 bp)
TGATCTCGCTTCTGAAATCGGCGGC
LOC_Os05g26110
OsAffx.27020.1.S1_x_at--284--471Chr05:15103551..15103575 (25 bp)
ATCTCGCTTCTGAAATCGGCGGCGG
LOC_Os05g26110
OsAffx.27020.1.S1_x_at--392--9511Chr05:15103552..15103576 (25 bp)
TCTCGCTTCTGAAATCGGCGGCGGC
LOC_Os05g26110
Target Sequence 
CCGATCGACTTAGCTAGCGACGTCGACGACGACGAGGACAGCGGCAAGGCGATATGGGATGATCTCGCTTCTGAAATCGG
CGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27020.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis