Browse Element(s) Details


Os.5199.2.S1_x_at

Description gb:AK119585.1
DB_XREF= gi:37989208
TID=Os.5199.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055B18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-C07, full insert sequence.
FL= gb:AK119585.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0871010/11expressed protein
LOC_Os05g260702/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08670Os.54495.1.S1_at5/119+4553930..4554720expressed protein
LOC_Os09g08680OsAffx.6211.1.S1_x_at11/119+4555816..4567790expressed protein
LOC_Os09g08680Os.26513.1.A1_at11/119+4555816..4567790expressed protein
LOC_Os09g08690OsAffx.29768.1.S1_at11/119+4568163..4568663hypothetical protein
LOC_Os09g08700OsAffx.29769.1.S1_at11/119+4570504..4571628hypothetical protein
LOC_Os09g08710Os.5199.1.S1_at11/119+4576706..4579685expressed protein
LOC_Os09g08710Os.5199.2.S1_x_at10/119+4576706..4579685expressed protein
LOC_Os09g08710Os.20593.1.S1_x_at1/119+4576706..4579685expressed protein
LOC_Os09g08720OsAffx.29770.1.S1_at11/119+4591170..4594141NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g08730OsAffx.6212.1.S1_at10/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730OsAffx.25952.1.S1_s_at2/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730Os.53576.1.S1_at1/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730Os.10259.1.S1_at1/119+4599910..4604598Pumilio-family RNA binding repeat containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5199.2.S1_x_at--951--10151Chr09:4579139..4579163 (25 bp)
TATCGTCTCATCAAGGACTCAGCTT
LOC_Os09g08710
Os.5199.2.S1_x_at--252--10032Chr09:4579190..4579214 (25 bp)
TAGACATGTACTACCAGATTTTTCA
LOC_Os09g08710
Os.5199.2.S1_x_at--417--3573Chr09:4579213..4579237 (25 bp)
CATTTTGGTAAGCATTTTTTGTCAC
LOC_Os09g08710
Os.5199.2.S1_x_at--307--2293Chr09:4579273..4579297 (25 bp)
AAATGAAGTGTGCACTCGGGTCCTC
LOC_Os09g08710
Os.5199.2.S1_x_at--316--9433Chr09:4579288..4579312 (25 bp)
TCGGGTCCTCCGTGCTCTAGATTCG
LOC_Os09g08710
Os.5199.2.S1_x_at--337--4191Chr09:4579314..4579338 (25 bp)
CCCTGCTTCCAATTGTCTAGACTTT
LOC_Os09g08710
Os.5199.2.S1_x_at--216--7791Chr09:4579444..4579468 (25 bp)
GGTCTTGAGAAAGGCCAGGCTTTGT
LOC_Os09g08710
Os.5199.2.S1_x_at--877--8891Chr09:4579483..4579507 (25 bp)
TGAGTGAGCTGCAAACCAGTTTTTT
LOC_Os09g08710
Os.5199.2.S1_x_at--369--6051Chr09:4579552..4579576 (25 bp)
GAGATTGAGCCAGAGTCAGAATTCT
LOC_Os09g08710
Os.5199.2.S1_x_at--332--5551Chr09:4579613..4579637 (25 bp)
GAAACGTGCTGTATATTGCTCCATT
LOC_Os09g08710
Os.5199.2.S1_x_at--593--4271Chr09:4579671..4579695 (25 bp)
CCTGGGAATTGTTGCATGTGTGATT
NONE
Target Sequence 
TATCGTCTCATCAAGGACTCAGCTTAATTATGTTATTTGCTCANTGCTANGTAGACATGTACTACCAGATTTTTCATTTT
GGTAAGCATTTTTTGTCACNGTATATGTTACATTTACATTTATATTACATGCATAAATGAAGTGTGCACTCGGGTCCTCC
GTGCTCTAGATTCGCCCCTGCTTCCAATTGTCTAGACTTTGGNAGAAAAGGTGGTNATGGTCTTGAGAAAGGCCAGGCTT
TGTTNTGAANTTAGAGATGAGTGAGCTGCAAACCAGTTTTTTTTNCTGANNTAGTGTTACATGCTTGTATCAATATTTGA
AGTGTAGAGATTGAGCCAGAGTCAGAATTCTANANAGCTAGTTTAGGTNTTNTGAACTTTGATGCNTGAAACGTGCTGTA
TATTGCTCCATTGNCAATGTATGGCTGTGAATTAATTGAAGCTNTCCTGGGAATTGTTGCATGTGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5199.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis