Browse Element(s) Details


Os.53576.1.S1_at

Description gb:AK073383.1
DB_XREF= gi:32983406
TID=Os.53576.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029C15, full insert sequence.
FL= gb:AK073383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2077411/11Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os09g087301/11Pumilio-family RNA binding repeat containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20730OsAffx.14751.1.S1_at9/114+11600064..11600789hypothetical protein
LOC_Os04g20740OsAffx.22629.1.S1_at2/114+11609519..11610004hypothetical protein
LOC_Os04g20760OsAffx.10155.1.S1_at1/114+11622225..11623697retrotransposon protein, putative, unclassified
LOC_Os04g20774Os.53576.1.S1_at11/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20774OsAffx.13896.1.S1_at11/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20774OsAffx.32196.1.S1_x_at2/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20790Os.46306.1.S1_x_at8/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20790Os.45976.1.S1_x_at4/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20790Os.45976.1.S1_at2/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20800OsAffx.13897.1.S1_at10/114+11648671..11650268Pumilio-family RNA binding repeat containing protein
LOC_Os04g20810Os.6642.1.S1_at10/114+11656456..11660424expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53576.1.S1_at--306--9951Chr04:11634455..11634479 (25 bp)
TACGCGGTCCAGAAGATTTTCCCAA
LOC_Os04g20774
Os.53576.1.S1_at--1128--771Chr04:11634574..11634598 (25 bp)
ATGTGGAACTTATCTGAGCTTTTTT
LOC_Os04g20774
Os.53576.1.S1_at--276--10471Chr04:11634602..11634626 (25 bp)
TTACCCTTTCAGCTTCTTGGGTATG
LOC_Os04g20774
Os.53576.1.S1_at--754--6911Chr04:11634622..11634646 (25 bp)
GTATGGACCTACCTTCTACAGAAGG
LOC_Os04g20774
Os.53576.1.S1_at--360--2432Chr04:11635184..11635208 (25 bp)
AAAACGGCAATCACGTTGTGCAGAA
LOC_Os04g20774
Os.53576.1.S1_at--503--6851Chr04:11635211..11635235 (25 bp)
GTTTGCAGTGTGTACCACCTAAATA
LOC_Os04g20774
Os.53576.1.S1_at--568--2531Chr04:11635241..11635265 (25 bp)
AACTAATCCATGCAAGCTTCTACTG
LOC_Os04g20774
Os.53576.1.S1_at--1126--2691Chr04:11635254..11635278 (25 bp)
AAGCTTCTACTGGAAGGCCATGGTT
LOC_Os04g20774
Os.53576.1.S1_at--186--891Chr04:11635268..11635292 (25 bp)
AGGCCATGGTTTTATCCACGCATCC
LOC_Os04g20774
Os.53576.1.S1_at--1042--751Chr04:11635299..11635323 (25 bp)
ATGTCGTGTCATCCAGGTTGATAGA
LOC_Os04g20774
Os.53576.1.S1_at--339--2851Chr04:11635368..11635392 (25 bp)
AAGTCATATCGCACCATTTCTACGC
LOC_Os04g20774
Target Sequence 
TACGCGGTCCAGAAGATTTTCCCAAATGGAAATTGACATTTATTTTCAAACAAAAATATTTGTTATTGATTATTACATCA
TGAATATACATTTTAAACTTTTTACAAAAAATAATGAAAATGTGGAACTTATCTGAGCTTTTTTTTTTTTACCCTTTCAG
CTTCTTGGGTATGGACCTACCTTCTACAGAAGGGAACTCATCGGTAAACTAACTGGTCATGTGGTAGCCTTGAGCCTTCA
CGTGTATGGATGTCGAGTGATGCAGAAGGCTTTCGAAGTAAGTGATATGGATCAGAGGATAGAGATGGCCAACGAGGTTG
GCAGAAATTTGATGCAGTGTGTATATGATCAAAACGGCAATCACGTTGTGCAGAAATGTTTGCAGTGTGTACCACCTAAA
TATATAAAACTAATCCATGCAAGCTTCTACTGGAAGGCCATGGTTTTATCCACGCATCCCTACGGATGTCGTGTCATCCA
GGTTGATAGATATATATGCTTTTCGTTTAAGTAGAATTTAAACAATGCTAAAATAAGTCATATCGCACCATTTCTACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis