Browse Element(s) Details


OsAffx.13896.1.S1_at

Description tigr:9632.m01902
TID=OsAffx.13896.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2077411/11Pumilio-family RNA binding repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20730OsAffx.14751.1.S1_at9/114+11600064..11600789hypothetical protein
LOC_Os04g20740OsAffx.22629.1.S1_at2/114+11609519..11610004hypothetical protein
LOC_Os04g20760OsAffx.10155.1.S1_at1/114+11622225..11623697retrotransposon protein, putative, unclassified
LOC_Os04g20774Os.53576.1.S1_at11/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20774OsAffx.13896.1.S1_at11/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20774OsAffx.32196.1.S1_x_at2/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20790Os.46306.1.S1_x_at8/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20790Os.45976.1.S1_x_at4/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20790Os.45976.1.S1_at2/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20800OsAffx.13897.1.S1_at10/114+11648671..11650268Pumilio-family RNA binding repeat containing protein
LOC_Os04g20810Os.6642.1.S1_at10/114+11656456..11660424expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13896.1.S1_at--838--331Chr04:11627733..11627757 (25 bp)
ATACAGCTGCACACTTCGTTGGTGT
LOC_Os04g20774
OsAffx.13896.1.S1_at--910--7691Chr04:11627771..11627795 (25 bp)
GGGTCGCACGTACGTCAAAGCAGTT
LOC_Os04g20774
OsAffx.13896.1.S1_at--512--10071Chr04:11627800..11627824 (25 bp)
TAGTGCCACTCATGTCGACTACGTT
LOC_Os04g20774
OsAffx.13896.1.S1_at--382--2431Chr04:11627838..11627862 (25 bp)
AAAAGCGTGGCCATATTGCTCATCC
LOC_Os04g20774
OsAffx.13896.1.S1_at--823--6811Chr04:11627909..11627933 (25 bp)
GTTTTTGTCGTTCATCATCGCAACA
LOC_Os04g20774
OsAffx.13896.1.S1_at--223--9811Chr04:11627935..11627959 (25 bp)
TAACTAGACTCGCTAACGTGGTTGT
LOC_Os04g20774
OsAffx.13896.1.S1_at--648--7911Chr04:11627954..11627978 (25 bp)
GGTTGTCTTGGATCACCATGGCATG
LOC_Os04g20774
OsAffx.13896.1.S1_at--223--671Chr04:11627976..11628000 (25 bp)
ATGACACAGTTCTTGCCTAACCTGT
LOC_Os04g20774
OsAffx.13896.1.S1_at--246--9331Chr04:11628055..11628079 (25 bp)
TCGCCTTGACGCCAGTGATAGTTTC
LOC_Os04g20774
OsAffx.13896.1.S1_at--858--2491Chr04:11628123..11628147 (25 bp)
AACAGTGTCGGGTTGGTCGCCAGCA
LOC_Os04g20774
OsAffx.13896.1.S1_at--1007--7851Chr04:11628160..11628184 (25 bp)
GGTATGTCCACATGAGGAACCCCAA
LOC_Os04g20774
Target Sequence 
ATACAGCTGCACACTTCGTTGGTGTTCTCCACCTCCTTGGGTCGCACGTACGTCAAAGCAGTTGCACTAGTGCCACTCAT
GTCGACTACGTTGGGGACACCGACGAAAAGCGTGGCCATATTGCTCATCCCCTGCACCCATGCGACGGGGTTGAAGTACC
AGTCGCCAAAGAAGTTGTTTTTGTCGTTCATCATCGCAACACTAACTAGACTCGCTAACGTGGTTGTCTTGGATCACCAT
GGCATGACACAGTTCTTGCCTAACCTGTCCACCATGGCCCCAAATGACTCGATCATCGAGAGGTCGAGGAACCCCGAGTT
GTTCGCCTTGACGCCAGTGATAGTTTCAGCATGGTTGTGGACCAGGAGCGACATCCAAACGTTGAGTGACAACAGTGTCG
GGTTGGTCGCCAGCACGATCAAGGGTAGGTATGTCCACATGAGGAACCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis