Browse Element(s) Details


OsAffx.13897.1.S1_at

Description tigr:9632.m01905
TID=OsAffx.13897.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT005311 At3g10360
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2080010/11Pumilio-family RNA binding repeat containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20760OsAffx.10155.1.S1_at1/114+11622225..11623697retrotransposon protein, putative, unclassified
LOC_Os04g20774Os.53576.1.S1_at11/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20774OsAffx.13896.1.S1_at11/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20774OsAffx.32196.1.S1_x_at2/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20790Os.46306.1.S1_x_at8/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20790Os.45976.1.S1_x_at4/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20790Os.45976.1.S1_at2/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20800OsAffx.13897.1.S1_at10/114+11648671..11650268Pumilio-family RNA binding repeat containing protein
LOC_Os04g20810Os.6642.1.S1_at10/114+11656456..11660424expressed protein
LOC_Os04g20820OsAffx.3840.1.S1_at11/114+11664285..11664729hypothetical protein
LOC_Os04g20830OsAffx.13898.1.S1_at11/114+11665758..11667828hypothetical protein
LOC_Os04g20840NANA4+11670512..11673089Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13897.1.S1_at--97--3031Chr04:11648744..11648768 (25 bp)
AATGCCTGACATTTGGTAGCATCCA
LOC_Os04g20800
OsAffx.13897.1.S1_at--838--10211Chr04:11648755..11648779 (25 bp)
TTTGGTAGCATCCATGACCGTCTCG
LOC_Os04g20800
OsAffx.13897.1.S1_at--187--6191Chr04:11648809..11649007 (25 bp)
GAGGACCAAATCCTGATGATGATGA
LOC_Os04g20800
OsAffx.13897.1.S1_at--339--10791Chr04:11649076..11649100 (25 bp)
TTGATAGTCACAGTTGTCAACCGCA
LOC_Os04g20800
OsAffx.13897.1.S1_at--512--851NONE
ATGGCAGGCACGTTACAATTCCGGG
NONE
OsAffx.13897.1.S1_at--658--871Chr04:11649658..11650089 (25 bp)
AGGCACGTTACAATTCCGGGAAGCG
LOC_Os04g20800
OsAffx.13897.1.S1_at--260--1611Chr04:11650086..11650110 (25 bp)
AGCGGAAAGAACAAGGCAACCAGTT
LOC_Os04g20800
OsAffx.13897.1.S1_at--967--7791Chr04:11650111..11650135 (25 bp)
GGTCATTTGATCCAACTAGGGTTCA
LOC_Os04g20800
OsAffx.13897.1.S1_at--873--2511Chr04:11650124..11650148 (25 bp)
AACTAGGGTTCACAGGACGCAAAAT
LOC_Os04g20800
OsAffx.13897.1.S1_at--1092--6991Chr04:11650152..11650176 (25 bp)
GTACAGCTTCATGAGAATTACCCAG
LOC_Os04g20800
OsAffx.13897.1.S1_at--384--2031Chr04:11650164..11650188 (25 bp)
GAGAATTACCCAGAACTAAAGGATA
LOC_Os04g20800
Target Sequence 
AATGCCTGACATTTGGTAGCATCCATGACCGTCTCGTCATCGCAGCTGACATCGCCGGTGCCGGCGAGGACCAAATCCTG
ATGATGATGATGGACGAGCATGGAAATTACGTGATACAAAAGATGTTGGAGACGATAGCGGATGAGTGGGTGGTGGACTT
GATAGTCACAGTTGTCAACCGCAACTTCTTCAGGCTCATCCACAACATCCATGGCAGGCACGTTACAATTCCGGGAAGCG
GAAAGAACAAGGCAACCAGTTGGTCATTTGATCCAACTAGGGTTCACAGGACGCAAAATATTGTACAGCTTCATGAGAAT
TACCCAGAACTAAAGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis