Browse Element(s) Details


Os.6642.1.S1_at

Description gb:AK068009.1
DB_XREF= gi:32978027
TID=Os.6642.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129H13, full insert sequence.
FL= gb:AK068009.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2081010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20774Os.53576.1.S1_at11/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20774OsAffx.13896.1.S1_at11/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20774OsAffx.32196.1.S1_x_at2/114+11625668..11635409Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os04g20790Os.46306.1.S1_x_at8/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20790Os.45976.1.S1_x_at4/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20790Os.45976.1.S1_at2/114+11638105..11647294transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20800OsAffx.13897.1.S1_at10/114+11648671..11650268Pumilio-family RNA binding repeat containing protein
LOC_Os04g20810Os.6642.1.S1_at10/114+11656456..11660424expressed protein
LOC_Os04g20820OsAffx.3840.1.S1_at11/114+11664285..11664729hypothetical protein
LOC_Os04g20830OsAffx.13898.1.S1_at11/114+11665758..11667828hypothetical protein
LOC_Os04g20840NANA4+11670512..11673089Zinc knuckle family protein
LOC_Os04g20850Os.45173.1.S1_x_at1/114+11676162..11682796retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g20860OsAffx.8338.1.S1_x_at3/114+11684030..11687706retrotransposon protein, putative, unclassified
LOC_Os04g20860OsAffx.10020.1.S1_x_at2/114+11684030..11687706retrotransposon protein, putative, unclassified
LOC_Os04g20860OsAffx.9790.1.S1_x_at1/114+11684030..11687706retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6642.1.S1_at--902--991Chr04:11659424..11659448 (25 bp)
AGGATCTTGGGATGCCTCAACTGCC
LOC_Os04g20810
Os.6642.1.S1_at--656--2551NONE
AACTGCCATTCATCCAGGTTGCTCT
NONE
Os.6642.1.S1_at--1048--10851Chr04:11658087..11658111 (25 bp)
TTGGTATCAACCTGCCCAATGTTGT
LOC_Os04g20810
Os.6642.1.S1_at--1091--3871Chr04:11658060..11658084 (25 bp)
CTGTGGACGCATTTGGACTGTCATT
LOC_Os04g20810
Os.6642.1.S1_at--163--6431Chr04:11658028..11658052 (25 bp)
GATCATCTGCATCTTACCACTGAAT
LOC_Os04g20810
Os.6642.1.S1_at--236--5591Chr04:11657986..11658010 (25 bp)
GAAATGCTCGCACAAGTCTACATGA
LOC_Os04g20810
Os.6642.1.S1_at--194--6871Chr04:11657894..11657918 (25 bp)
GTTTGGCACCTAAATATCTTTCTCT
LOC_Os04g20810
Os.6642.1.S1_at--563--351Chr04:11657856..11657880 (25 bp)
ATAATTCTTCATTTTCTCGTTGGTT
LOC_Os04g20810
Os.6642.1.S1_at--211--9031Chr04:11657788..11657812 (25 bp)
TGCACAGTAGCATTGATCCTTTCAT
LOC_Os04g20810
Os.6642.1.S1_at--778--1471Chr04:11657641..11657665 (25 bp)
AGAATTCAACTCCAGTGCCTTTTGT
LOC_Os04g20810
Os.6642.1.S1_at--40--7291Chr04:11657627..11657651 (25 bp)
GTGCCTTTTGTGTTCCTCCAATATA
LOC_Os04g20810
Target Sequence 
AGGATCTTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACATTGAAAAAGTGAGG
AAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTNACTGTGGACGCATTTGGACTGTCATTAAATGAAGATCATCTGCA
TCTTACCACTGAATCACAAGTAAAGCTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCT
AGGAGGAGTCCTGTCAGGTGAAATAATCTGTTTAACTCTGGAAGTTTGGCACCTAAATATCTTTCTCTTTAAACTGTTAT
TATAATTCTTCATTTTCTCGTTGGTTGAAACTATCTAGAGGTGAACCAACCAATTCATCTTGCATTTCTTGCACAGTAGC
ATTGATCCTTTCATTTAGCAGGACATCAACTTACTGGTCAATTATGTGTTGTATCTAAATTTAACAATTCGAGAGCAAAA
CATCNNNNNNACCCAAGAGGAAGTAATTTTCTCCTTTTCAACATAAGTTGGCCATGTAAGATAGAATTCAACTCCAGTGC
CTTTTGTGTTCCTCCAATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis