Browse Element(s) Details


OsAffx.6211.1.S1_x_at

Description tigr:9637.m00639
TID=OsAffx.6211.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0868011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08650NANA9+4525474..4531479retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08660Os.9109.1.S1_a_at11/119+4534277..4542655haloacid dehalogenase-like hydrolase family protein, expressed
LOC_Os09g08670Os.54495.1.S1_at5/119+4553930..4554720expressed protein
LOC_Os09g08680OsAffx.6211.1.S1_x_at11/119+4555816..4567790expressed protein
LOC_Os09g08680Os.26513.1.A1_at11/119+4555816..4567790expressed protein
LOC_Os09g08690OsAffx.29768.1.S1_at11/119+4568163..4568663hypothetical protein
LOC_Os09g08700OsAffx.29769.1.S1_at11/119+4570504..4571628hypothetical protein
LOC_Os09g08710Os.5199.1.S1_at11/119+4576706..4579685expressed protein
LOC_Os09g08710Os.5199.2.S1_x_at10/119+4576706..4579685expressed protein
LOC_Os09g08710Os.20593.1.S1_x_at1/119+4576706..4579685expressed protein
LOC_Os09g08720OsAffx.29770.1.S1_at11/119+4591170..4594141NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6211.1.S1_x_at--57--10511Chr09:4566283..4566307 (25 bp)
TTCAACCGGAGGCATGTATCCACCT
LOC_Os09g08680
OsAffx.6211.1.S1_x_at--564--6911Chr09:4566298..4566322 (25 bp)
GTATCCACCTGTAAGTGCAGCTGTT
LOC_Os09g08680
OsAffx.6211.1.S1_x_at--377--5071Chr09:4566314..4566338 (25 bp)
GCAGCTGTTGCACCACCAGGTAAAT
LOC_Os09g08680
OsAffx.6211.1.S1_x_at--839--4371Chr09:4566513..4566537 (25 bp)
CCAATGTCTATATTGCCGGGCAGCA
LOC_Os09g08680
OsAffx.6211.1.S1_x_at--970--5291Chr09:4566988..4567012 (25 bp)
GAAGGCTCCGGTGTCTGGATTCCTG
LOC_Os09g08680
OsAffx.6211.1.S1_x_at--486--8111Chr09:4567018..4567042 (25 bp)
GGACGTGATATTTCTGGTCTCCAGC
LOC_Os09g08680
OsAffx.6211.1.S1_x_at--610--8591Chr09:4567032..4567056 (25 bp)
TGGTCTCCAGCCTAGCAACTATTAC
LOC_Os09g08680
OsAffx.6211.1.S1_x_at--648--2511Chr09:4567048..4567072 (25 bp)
AACTATTACGGACTGCCTCTGCAGG
LOC_Os09g08680
OsAffx.6211.1.S1_x_at--898--3831Chr09:4567094..4567118 (25 bp)
CTGCTCAAGCTGGTCATGGTACTTT
LOC_Os09g08680
OsAffx.6211.1.S1_x_at--64--251Chr09:4567128..4567152 (25 bp)
ATATCACCCGGCACAGACAATGGCT
LOC_Os09g08680
OsAffx.6211.1.S1_x_at--1068--5571Chr09:4567210..4567234 (25 bp)
GAAATGGTTGGACCACCTGCCAATG
LOC_Os09g08680
Target Sequence 
TTCAACCGGAGGCATGTATCCACCTGTAAGTGCAGCTGTTGCACCACCAGGTAAATACCCAACCAATACATACAAGCCTG
GTGCTAACAATGGAACCCAGACACATGTTGGAAACCATGGTGCATATGGAACATATGATTCTAGTCCGTCAATCTATACA
AATAACACTATGGTGGCAAGTGGAACTTCTGTCGAGAGTGATGATATCAGTGGATCCCAATTCAAAGAAACCAATGTCTA
TATTGCCGGGCAGCAGAGCGAAGGCTCCGGTGTCTGGATTCCTGCCCCAGGACGTGATATTTCTGGTCTCCAGCCTAGCA
ACTATTACGGACTGCCTCTGCAGGGACAGCACCTGGCGTTTGCCCCTGCTCAAGCTGGTCATGGTACTTTTGGAGGGATA
TATCACCCGGCACAGACAATGGCTGGAGCCGCTGTTCATCCACTACTACAGCCACCTCAGGCCATTGCTGGGGTTGGTGG
TGAAATGGTTGGACCACCTGCCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6211.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis