Browse Element(s) Details


OsAffx.29770.1.S1_at

Description tigr:9637.m00643
TID=OsAffx.29770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0872011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08680OsAffx.6211.1.S1_x_at11/119+4555816..4567790expressed protein
LOC_Os09g08680Os.26513.1.A1_at11/119+4555816..4567790expressed protein
LOC_Os09g08690OsAffx.29768.1.S1_at11/119+4568163..4568663hypothetical protein
LOC_Os09g08700OsAffx.29769.1.S1_at11/119+4570504..4571628hypothetical protein
LOC_Os09g08710Os.5199.1.S1_at11/119+4576706..4579685expressed protein
LOC_Os09g08710Os.5199.2.S1_x_at10/119+4576706..4579685expressed protein
LOC_Os09g08710Os.20593.1.S1_x_at1/119+4576706..4579685expressed protein
LOC_Os09g08720OsAffx.29770.1.S1_at11/119+4591170..4594141NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g08730OsAffx.6212.1.S1_at10/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730OsAffx.25952.1.S1_s_at2/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730Os.53576.1.S1_at1/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08730Os.10259.1.S1_at1/119+4599910..4604598Pumilio-family RNA binding repeat containing protein
LOC_Os09g08740Os.46862.1.S1_at1/119+4607974..4609200hypothetical protein
LOC_Os09g08750OsAffx.22385.1.S1_x_at5/119+4609549..4614447retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08750OsAffx.20329.1.S1_at3/119+4609549..4614447retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29770.1.S1_at--54--6571Chr09:4593067..4593091 (25 bp)
GATTCAGCTAGTGGTGGTGCTTCCT
LOC_Os09g08720
OsAffx.29770.1.S1_at--138--3831Chr09:4593090..4593114 (25 bp)
CTGCCATGACACTAGGCCAGATGTT
LOC_Os09g08720
OsAffx.29770.1.S1_at--1042--3071Chr09:4593117..4593141 (25 bp)
AATCAACCATAAACCCTAGCATCAG
LOC_Os09g08720
OsAffx.29770.1.S1_at--130--2431Chr09:4593173..4593197 (25 bp)
AAAACCCACCGGAATGCTGTCGCTG
LOC_Os09g08720
OsAffx.29770.1.S1_at--423--7751Chr09:4593238..4593262 (25 bp)
GGTGTATGAAGACCCCAAGGCGCAT
LOC_Os09g08720
OsAffx.29770.1.S1_at--930--891Chr09:4593255..4593279 (25 bp)
AGGCGCATGGGCGTTATCTCTGCAT
LOC_Os09g08720
OsAffx.29770.1.S1_at--1133--451Chr09:4593270..4593294 (25 bp)
ATCTCTGCATTGCTAGTGTGCTTCA
LOC_Os09g08720
OsAffx.29770.1.S1_at--26--1791Chr09:4593294..4593318 (25 bp)
ACCGGTCCGAGCTTATTCAGATGAT
LOC_Os09g08720
OsAffx.29770.1.S1_at--699--5971Chr09:4593321..4593345 (25 bp)
GAGAACTCTTTCCACAGTATCCAAT
LOC_Os09g08720
OsAffx.29770.1.S1_at--1032--8591Chr09:4594005..4594029 (25 bp)
TGGTCCAACCTTTCAAGTTCTCTAA
LOC_Os09g08720
OsAffx.29770.1.S1_at--1026--2451Chr09:4594085..4594109 (25 bp)
AACACACTGATATGCCTACGGGAGA
LOC_Os09g08720
Target Sequence 
GATTCAGCTAGTGGTGGTGCTTCCTGCCATGACACTAGGCCAGATGTTGCAATCAACCATAAACCCTAGCATCAGACATA
TCGCCGATTTCTTGAACGGAAGCAGGAAAACCCACCGGAATGCTGTCGCTGGGTATGTTGATGCGCGCGATGTGGCCCGT
GCACATGCACTGGTGTATGAAGACCCCAAGGCGCATGGGCGTTATCTCTGCATTGCTAGTGTGCTTCACCGGTCCGAGCT
TATTCAGATGATCAGAGAACTCTTTCCACAGTATCCAATCACCTGTAACAAGTGTGAAGACAGCAAGCAGATGGTCCAAC
CTTTCAAGTTCTCTAATCAAAGGCTGAGAGACTTGGGCCTCACATTCACCCCCATAAAAGAAAGTTTGTACAACACACTG
ATATGCCTACGGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis