Browse Element(s) Details


OsAffx.4436.1.S1_at

Description tigr:9633.m02360
TID=OsAffx.4436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2614011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26110OsAffx.27020.1.S1_x_at11/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26110OsAffx.15837.1.S1_at7/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26110Os.18826.1.S1_at1/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26120OsAffx.27021.1.S1_at10/115+15113432..15114646hypothetical protein
LOC_Os05g26130OsAffx.27022.1.S1_at11/115+15119046..15119306hypothetical protein
LOC_Os05g26140OsAffx.4436.1.S1_at11/115+15129309..15134345hypothetical protein
LOC_Os05g26140OsAffx.24130.1.S1_x_at2/115+15129309..15134345hypothetical protein
LOC_Os05g26150NANA5+15140275..15140807hypothetical protein
LOC_Os05g26160Os.27066.1.A1_x_at1/115+15142398..15146047hypothetical protein
LOC_Os05g26170NANA5+15146767..15154892retrotransposon protein, putative, unclassified
LOC_Os05g26180NANA5+15157161..15161498retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4436.1.S1_at--866--9671Chr05:15131540..15131564 (25 bp)
TCACTCATCGAACCAGCCAATTGGA
LOC_Os05g26140
OsAffx.4436.1.S1_at--276--5431Chr05:15131531..15131555 (25 bp)
GAACCAGCCAATTGGACATCCCAGA
LOC_Os05g26140
OsAffx.4436.1.S1_at--761--11Chr05:15131422..15131545 (25 bp)
ATTGGACATCCCAGAGGGTTCGCGC
LOC_Os05g26140
OsAffx.4436.1.S1_at--313--1071Chr05:15131408..15131432 (25 bp)
AGGGTTCGCGCTGTCTCGGGCACAT
LOC_Os05g26140
OsAffx.4436.1.S1_at--198--4151Chr05:15131377..15131401 (25 bp)
CGCGCGCGGTGCAGTCACTGGACAC
LOC_Os05g26140
OsAffx.4436.1.S1_at--677--1951Chr05:15131361..15131385 (25 bp)
ACTGGACACCGGACTGGACGTCTTG
LOC_Os05g26140
OsAffx.4436.1.S1_at--165--5731Chr05:15131345..15131369 (25 bp)
GACGTCTTGGTGGTGCATCGACCAC
LOC_Os05g26140
OsAffx.4436.1.S1_at--543--3611Chr05:15131340..15131364 (25 bp)
CTTGGTGGTGCATCGACCACGTGGC
LOC_Os05g26140
OsAffx.4436.1.S1_at--1150--7471Chr05:15131314..15131338 (25 bp)
GTGTGGACGCAGTACTCGTGGTCGT
LOC_Os05g26140
OsAffx.4436.1.S1_at--672--1351Chr05:15131253..15131277 (25 bp)
AGAGCTTGAGCGTGTTGTCCCAGGA
LOC_Os05g26140
OsAffx.4436.1.S1_at--1022--4091Chr05:15129349..15129373 (25 bp)
CGAAAAGGCCGCCTATTGATGAGGA
LOC_Os05g26140
Target Sequence 
TCACTCATCGAACCAGCCAATTGGACATCCCAGAGGGTTCGCGCTGTCTCGGGCACATCCCAGTCGCGCGCGGTGCAGTC
ACTGGACACCGGACTGGACGTCTTGGTGGTGCATCGACCACGTGGCGGTGTGGACGCAGTACTCGTGGTCGTGGAAAGTA
TGGACAGAGGCGGGACGATTGGGGGACCAGAGCTTGAGCGTGTTGTCCCAGGAGGCCGAGAAGAAGCCGAAAAGGCCGCC
TATTGATGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis