Browse Element(s) Details


OsAffx.27021.1.S1_at

Description tigr:9631.m02777
TID=OsAffx.27021.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2612010/11hypothetical protein
LOC_Os03g2807010/11hypothetical protein
LOC_Os06g3920010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26080OsAffx.9860.1.S1_x_at1/115+15091764..15092511transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26090Os.46306.1.S1_x_at1/115+15093335..15094951transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26100Os.14491.2.S1_x_at3/115+15098259..15101825transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26100Os.47463.1.S1_x_at2/115+15098259..15101825transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26110OsAffx.27020.1.S1_x_at11/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26110OsAffx.15837.1.S1_at7/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26110Os.18826.1.S1_at1/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26120OsAffx.27021.1.S1_at10/115+15113432..15114646hypothetical protein
LOC_Os05g26130OsAffx.27022.1.S1_at11/115+15119046..15119306hypothetical protein
LOC_Os05g26140OsAffx.4436.1.S1_at11/115+15129309..15134345hypothetical protein
LOC_Os05g26140OsAffx.24130.1.S1_x_at2/115+15129309..15134345hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27021.1.S1_at--676--8053Chr06:23277085..23277109 (25 bp)
GGAGATGGTTGCGTACTGTCACGCC
LOC_Os06g39200
OsAffx.27021.1.S1_at--1054--5673Chr06:23277140..23277164 (25 bp)
GACATTCTTCGCCAATATTTAGATG
LOC_Os06g39200
OsAffx.27021.1.S1_at--700--2813Chr06:23277185..23277209 (25 bp)
AAGATTTGTGAGGTCCTTGATGCAA
LOC_Os06g39200
OsAffx.27021.1.S1_at--926--1673Chr06:23277302..23277326 (25 bp)
AGCCGTGCTAGACTTCTATACCTTA
LOC_Os06g39200
OsAffx.27021.1.S1_at--628--10173Chr06:23277318..23277342 (25 bp)
TATACCTTACCTTAGTGATCACTGT
LOC_Os06g39200
OsAffx.27021.1.S1_at--613--6453Chr06:23277334..23277358 (25 bp)
GATCACTGTCTTATTTGCTTGCTTA
LOC_Os06g39200
OsAffx.27021.1.S1_at--1124--9051NONE
TGCTTGCTTAATGTTTTCAGGCTCA
NONE
OsAffx.27021.1.S1_at--221--2513Chr06:23277836..23277860 (25 bp)
AACATTACTGGTTCATAGCAGCCTT
LOC_Os06g39200
OsAffx.27021.1.S1_at--1045--5073Chr06:23277853..23277877 (25 bp)
GCAGCCTTACTAGCAAAATACTTAA
LOC_Os06g39200
OsAffx.27021.1.S1_at--645--7593Chr06:23277884..23277908 (25 bp)
GGGCAGGCTACATTGTCACTGCAAA
LOC_Os06g39200
OsAffx.27021.1.S1_at--166--7893Chr06:23277911..23277935 (25 bp)
GGTTACTACAAGTTCACAGGCACAC
LOC_Os06g39200
Target Sequence 
GGAGATGGTTGCGTACTGTCACGCCNGCGAGTACGATCATATGCAAGAAACAANCGACATTCTTCGCCAATATTTAGATG
ATGAGAAGAATGAAAAAGCGAAGATTTGTGAGGTCCTTGATGCAAAGGAAAATGAGTTGAAGTCAACAATTGAGACNCTC
AACCAGTGTAGGCTGGAGTGTTTAGCGATGAAGAAGCAGTTGGAAGAAGTTAAATTTAGCCGTGCTAGACTTCTATACCT
TACCTTAGTGATCACTGTCTTATTTGCTTGCTTAATGTTTTCAGGCTCAACATNTGCATACAACAGTANAGACATACATG
AGCAACATTACTGGTTCATAGCAGCCTTACTAGCAAAATACTTAAGAGATGGGGCAGGCTACATTGTCACTGCAAATAGG
TTACTACAAGTTCACAGGCACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis