Browse Element(s) Details


OsAffx.27022.1.S1_at

Description tigr:9633.m02359
TID=OsAffx.27022.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2613011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26090Os.46306.1.S1_x_at1/115+15093335..15094951transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26100Os.14491.2.S1_x_at3/115+15098259..15101825transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26100Os.47463.1.S1_x_at2/115+15098259..15101825transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26110OsAffx.27020.1.S1_x_at11/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26110OsAffx.15837.1.S1_at7/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26110Os.18826.1.S1_at1/115+15103420..15112564transposon protein, putative, Mutator sub-class
LOC_Os05g26120OsAffx.27021.1.S1_at10/115+15113432..15114646hypothetical protein
LOC_Os05g26130OsAffx.27022.1.S1_at11/115+15119046..15119306hypothetical protein
LOC_Os05g26140OsAffx.4436.1.S1_at11/115+15129309..15134345hypothetical protein
LOC_Os05g26140OsAffx.24130.1.S1_x_at2/115+15129309..15134345hypothetical protein
LOC_Os05g26150NANA5+15140275..15140807hypothetical protein
LOC_Os05g26160Os.27066.1.A1_x_at1/115+15142398..15146047hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27022.1.S1_at--377--7551Chr05:15119201..15119225 (25 bp)
GTGGCGAATGCCAGTGTCCCGAGCA
LOC_Os05g26130
OsAffx.27022.1.S1_at--432--5271Chr05:15119196..15119220 (25 bp)
GAATGCCAGTGTCCCGAGCAATCGA
LOC_Os05g26130
OsAffx.27022.1.S1_at--735--1091Chr05:15119189..15119213 (25 bp)
AGTGTCCCGAGCAATCGAGGCACGC
LOC_Os05g26130
OsAffx.27022.1.S1_at--395--9371Chr05:15119175..15119199 (25 bp)
TCGAGGCACGCCAAACCCATCAGAT
LOC_Os05g26130
OsAffx.27022.1.S1_at--378--1811Chr05:15119161..15119185 (25 bp)
ACCCATCAGATCTTGATGTTGTCAC
LOC_Os05g26130
OsAffx.27022.1.S1_at--517--732Chr05:15119146..15119170 (25 bp)
ATGTTGTCACCATCACACAACCTTA
LOC_Os05g26130
OsAffx.27022.1.S1_at--743--9651Chr05:15119140..15119164 (25 bp)
TCACCATCACACAACCTTATTACAG
LOC_Os05g26130
OsAffx.27022.1.S1_at--361--10411Chr05:15119124..15119148 (25 bp)
TTATTACAGCAACCGCCTAAACCGA
LOC_Os05g26130
OsAffx.27022.1.S1_at--21--5171Chr05:15119116..15119140 (25 bp)
GCAACCGCCTAAACCGAGCATGGAG
LOC_Os05g26130
OsAffx.27022.1.S1_at--407--9831Chr05:15119107..15119131 (25 bp)
TAAACCGAGCATGGAGCCCCTATAT
LOC_Os05g26130
OsAffx.27022.1.S1_at--1077--831Chr05:15119097..15119121 (25 bp)
ATGGAGCCCCTATATCCAGCCATGC
LOC_Os05g26130
Target Sequence 
GTGGCGAATGCCAGTGTCCCGAGCAATCGAGGCACGCCAAACCCATCAGATCTTGATGTTGTCACCATCACACAACCTTA
TTACAGCAACCGCCTAAACCGAGCATGGAGCCCCTATATCCAGCCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis