Browse Element(s) Details


Os.18826.1.S1_at

Description gb:AK100867.1
DB_XREF= gi:32986076
TID=Os.18826.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18826 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1012B02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023124E13, full insert sequence.
FL= gb:AK100867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1585011/11Josephin, putative, expressed
LOC_Os05g261101/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15800Os.25396.1.S1_at11/113+8697171..8698887potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os03g15810OsAffx.25102.1.S1_at11/113+8699414..8707083ATPase, AAA family protein, expressed
LOC_Os03g15820OsAffx.22291.2.S1_at11/113+8707695..8708210hypothetical protein
LOC_Os03g15830OsAffx.30677.2.S1_at11/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.4.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.3.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15840Os.7313.1.S1_at11/113+8716182..8720250glycosyl transferase, group 1 family protein, expressed
LOC_Os03g15850Os.18826.2.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15850Os.18826.1.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15860Os.9861.1.S1_at11/113+8728990..8731960peroxisomal membrane protein, putative, expressed
LOC_Os03g15870Os.9226.1.S1_a_at11/113+8732604..873506350S ribosomal protein L4, chloroplast precursor, putative, expressed
LOC_Os03g15880Os.19476.1.S1_at11/113+8740551..8746062Coronatine-insensitive protein 1, putative, expressed
LOC_Os03g15890Os.12705.2.S1_x_at11/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15890Os.12705.1.S1_at10/113+8746627..8749601RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18826.1.S1_at--374--2631Chr03:8721433..8721457 (25 bp)
AAGGTCCAATTCTCCAAACGTACAG
LOC_Os03g15850
Os.18826.1.S1_at--272--6551Chr03:8721403..8721427 (25 bp)
GATTTTCTACTACTGTCACGGTCCA
LOC_Os03g15850
Os.18826.1.S1_at--599--7271Chr03:8721383..8721407 (25 bp)
GTCCATGGCCTTTCTGTTTAATTGT
LOC_Os03g15850
Os.18826.1.S1_at--1160--2351Chr03:8721318..8721342 (25 bp)
AAACCTGCTTGCTGAGACATCGACT
LOC_Os03g15850
Os.18826.1.S1_at--469--5671Chr03:8721303..8721327 (25 bp)
GACATCGACTGTGCACAATTACATG
LOC_Os03g15850
Os.18826.1.S1_at--1105--7311Chr03:8721264..8721288 (25 bp)
GTGCATGAAAACCACCTTTTTTCTT
LOC_Os03g15850
Os.18826.1.S1_at--68--2511Chr03:8721196..8721220 (25 bp)
AACATGTTGCTTGTGCTGTTTGCAT
LOC_Os03g15850
Os.18826.1.S1_at--461--8771Chr03:8721180..8721204 (25 bp)
TGTTTGCATGGATATCACCTTTTTT
LOC_Os03g15850
Os.18826.1.S1_at--347--2651Chr03:8721083..8721107 (25 bp)
AACCACATTAAGTCCGCATTTTGGG
LOC_Os03g15850
Os.18826.1.S1_at--1049--2832Chr05:15112363..15112563 (25 bp)
AAGTAGTGTTAGTTTTGCTGCAATA
LOC_Os05g26110
Os.18826.1.S1_at--749--4211Chr03:8720934..8720958 (25 bp)
CCGCGCTCATTCAATTTGTTGATTC
LOC_Os03g15850
Target Sequence 
AAGGTCCAATTCTCCAAACGTACAGCTGATGATTTTCTACTACTGTCACGGTCCATGGCCTTTCTGTTTAATTGTTCAGC
AAGTCAAATGCAAACAAGTAATGAGCAGAGACAGAAAACCTGCTTGCTGAGACATCGACTGTGCACAATTACATGTTTCT
TATGCCATAGTGCATGAAAACCACCTTTTTTCTTGGCGGAGGGAGTAATATTGTGGTGTTAATNAATTGTCAATGAAAAC
ATGTTGCTTGTGCTGTTTGCATGGATATCACCTTTTTTTTNGGGGNCGGAGGGGATTGTGTTGATAGAGATAGTGTAGTT
TTGCTGCAATAGTTGTATATGTTATGTGGAAAACCACATTAAGTCCGCATTTTGGGGCACTCATACAATTTGTTGATTCA
TCTTGTAAAATGGAAAGTTGTAGCTTTGTTTTAAGTAGTGTTAGTTTTGCTGCAATAGTTGTATATGTTCTGTGGAAAAC
CATATTAAGTCCACATTTTNCCGCGCTCATTCAATTTGTTGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis