Browse Element(s) Details


OsAffx.30677.2.S1_at

Description tigr:9631.m01534
TID=OsAffx.30677.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1583011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15780Os.7114.1.S1_s_at11/113+8681841..8686829anthranilate synthase component I family protein, expressed
LOC_Os03g15790NANA3+8692118..8693695Zinc finger, C2H2 type family protein, expressed
LOC_Os03g15800Os.25396.1.S1_at11/113+8697171..8698887potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os03g15810OsAffx.25102.1.S1_at11/113+8699414..8707083ATPase, AAA family protein, expressed
LOC_Os03g15820OsAffx.22291.2.S1_at11/113+8707695..8708210hypothetical protein
LOC_Os03g15830OsAffx.30677.2.S1_at11/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.4.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.3.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15840Os.7313.1.S1_at11/113+8716182..8720250glycosyl transferase, group 1 family protein, expressed
LOC_Os03g15850Os.18826.2.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15850Os.18826.1.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15860Os.9861.1.S1_at11/113+8728990..8731960peroxisomal membrane protein, putative, expressed
LOC_Os03g15870Os.9226.1.S1_a_at11/113+8732604..873506350S ribosomal protein L4, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30677.2.S1_at--59--9231Chr03:8714782..8715014 (25 bp)
TCCAGGTGCTGAAGGCTTAGAGCCA
LOC_Os03g15830
OsAffx.30677.2.S1_at--428--10451Chr03:8715006..8715030 (25 bp)
TTAGAGCCAAGCCAGGCGGAACATT
LOC_Os03g15830
OsAffx.30677.2.S1_at--119--3251Chr03:8715013..8715037 (25 bp)
CAAGCCAGGCGGAACATTGCGAAGC
LOC_Os03g15830
OsAffx.30677.2.S1_at--383--5491Chr03:8715024..8715048 (25 bp)
GAACATTGCGAAGCGCTCTGGAGTC
LOC_Os03g15830
OsAffx.30677.2.S1_at--681--2671Chr03:8715034..8715058 (25 bp)
AAGCGCTCTGGAGTCGGGTGAAGCT
LOC_Os03g15830
OsAffx.30677.2.S1_at--1091--9411Chr03:8715047..8715071 (25 bp)
TCGGGTGAAGCTGTTGAGTCCAAGA
LOC_Os03g15830
OsAffx.30677.2.S1_at--1009--6091Chr03:8715062..8715086 (25 bp)
GAGTCCAAGATTGCGATCGGCCTAT
LOC_Os03g15830
OsAffx.30677.2.S1_at--211--3231Chr03:8715067..8715091 (25 bp)
CAAGATTGCGATCGGCCTATGGAAC
LOC_Os03g15830
OsAffx.30677.2.S1_at--418--71Chr03:8715071..8715095 (25 bp)
ATTGCGATCGGCCTATGGAACAGAT
LOC_Os03g15830
OsAffx.30677.2.S1_at--1--6411Chr03:8715076..8715100 (25 bp)
GATCGGCCTATGGAACAGATGACAA
LOC_Os03g15830
OsAffx.30677.2.S1_at--1057--5491Chr03:8715088..8715112 (25 bp)
GAACAGATGACAAAGGCCACCCTAA
LOC_Os03g15830
Target Sequence 
TCCAGGTGCTGAAGGCTTAGAGCCAAGCCAGGCGGAACATTGCGAAGCGCTCTGGAGTCGGGTGAAGCTGTTGAGTCCAA
GATTGCGATCGGCCTATGGAACAGATGACAAAGGCCACCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30677.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis