Browse Element(s) Details


Os.7114.1.S1_s_at

Description gb:AB022603.1
DB_XREF= gi:5360658
GEN=OsASA2
TID=Os.7114.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7114 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsASA2 mRNA for anthranilate synthase alpha 2 subunit, complete cds.
PROD=anthranilate synthase alpha 2 subunit
FL= gb:AK105648.1 gb:AK073501.1 gb:AB022603.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1578011/11anthranilate synthase component I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15740Os.15593.1.S1_at11/113+8658231..8661389calcium-binding EF hand family protein, putative, expressed
LOC_Os03g15750Os.33208.1.S1_at11/113+8662824..8666613Longevity-assurance protein containing protein, expressed
LOC_Os03g15760NANA3+8667439..8671132hypothetical protein
LOC_Os03g15770Os.45938.1.S1_at11/113+8677906..8680663Protein kinase domain containing protein, expressed
LOC_Os03g15780Os.7114.1.S1_s_at11/113+8681841..8686829anthranilate synthase component I family protein, expressed
LOC_Os03g15790NANA3+8692118..8693695Zinc finger, C2H2 type family protein, expressed
LOC_Os03g15800Os.25396.1.S1_at11/113+8697171..8698887potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os03g15810OsAffx.25102.1.S1_at11/113+8699414..8707083ATPase, AAA family protein, expressed
LOC_Os03g15820OsAffx.22291.2.S1_at11/113+8707695..8708210hypothetical protein
LOC_Os03g15830OsAffx.30677.2.S1_at11/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.4.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.3.S1_x_at8/113+8711820..8715143hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009073biological_processaromatic amino acid family biosynthesis
GO:0009611biological_processresponse to wounding
GO:0009618biological_processresponse to pathogenic bacteria
GO:0005950cellular_componentanthranilate synthase complex
GO:0009507cellular_componentchloroplast
GO:0004049molecular_functionanthranilate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7114.1.S1_s_at--1066--1871Chr03:8682519..8682543 (25 bp)
ACGAGGACCATACAGTGGCGGCCTT
LOC_Os03g15780
Os.7114.1.S1_s_at--146--3911Chr03:8682501..8682525 (25 bp)
CGGCCTTGGAGGGATATCATTTGAC
LOC_Os03g15780
Os.7114.1.S1_s_at--372--5751Chr03:8682479..8682503 (25 bp)
GACGGAGACATGCTTATCGCTCTTG
LOC_Os03g15780
Os.7114.1.S1_s_at--187--1731Chr03:8682446..8682470 (25 bp)
ACCATTGTGTTCTCAACAGCGCCAA
LOC_Os03g15780
Os.7114.1.S1_s_at--368--4391Chr03:8682426..8682450 (25 bp)
GCCAAGCCACAACACGATGTACTCA
LOC_Os03g15780
Os.7114.1.S1_s_at--743--2191Chr03:8682400..8682424 (25 bp)
ACAAAGACACCGAGAGGCGCCGGGA
LOC_Os03g15780
Os.7114.1.S1_s_at--159--4731Chr03:8682356..8682380 (25 bp)
GCTGGTGCTGGCATTGTCGCTGATA
LOC_Os03g15780
Os.7114.1.S1_s_at--969--8831Chr03:8682336..8682360 (25 bp)
TGATAGCAGCCCAGACGACGAGCAA
LOC_Os03g15780
Os.7114.1.S1_s_at--840--5971Chr03:8682302..8682326 (25 bp)
GAGAACAAGGCAGCCGCTCTGGCTC
LOC_Os03g15780
Os.7114.1.S1_s_at--251--9371Chr03:8682279..8682303 (25 bp)
TCGAGCCATCGATCTTGCTGAATCA
LOC_Os03g15780
Os.7114.1.S1_s_at--288--9111Chr03:8682264..8682288 (25 bp)
TGCTGAATCAGCTTTCGTAGACAAG
LOC_Os03g15780
Target Sequence 
ACGAGGACCATACAGTGGCGGCCTTGGAGGGATATCATTTGACGGAGACATGCTTATCGCTCTTGCACTCCGCACCATTG
TGTTCTCAACAGCGCCAAGCCACAACACGATGTACTCATACAAAGACACCGAGAGGCGCCGGGAGTGGGTCGCTCACCTT
CAGGCTGGTGCTGGCATTGTCGCTGATAGCAGCCCAGACGACGAGCAACGTGAATGCGAGAACAAGGCAGCCGCTCTGGC
TCGAGCCATCGATCTTGCTGAATCAGCTTTCGTAGACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7114.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis