Browse Element(s) Details


Os.45938.1.S1_at

Description gb:NM_187446.1
DB_XREF= gi:34901977
GEN=OJ1012B02.3
TID=Os.45938.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45938 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor serthr protein (OJ1012B02.3), mRNA.
PROD=putative receptor serthr protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1577011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15730Os.11649.1.S1_at11/113+8652651..8655595S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os03g15740Os.15593.1.S1_at11/113+8658231..8661389calcium-binding EF hand family protein, putative, expressed
LOC_Os03g15750Os.33208.1.S1_at11/113+8662824..8666613Longevity-assurance protein containing protein, expressed
LOC_Os03g15760NANA3+8667439..8671132hypothetical protein
LOC_Os03g15770Os.45938.1.S1_at11/113+8677906..8680663Protein kinase domain containing protein, expressed
LOC_Os03g15780Os.7114.1.S1_s_at11/113+8681841..8686829anthranilate synthase component I family protein, expressed
LOC_Os03g15790NANA3+8692118..8693695Zinc finger, C2H2 type family protein, expressed
LOC_Os03g15800Os.25396.1.S1_at11/113+8697171..8698887potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os03g15810OsAffx.25102.1.S1_at11/113+8699414..8707083ATPase, AAA family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45938.1.S1_at--477--6051Chr03:8679628..8679652 (25 bp)
GAGATTTTGGACTGGCCAAGCTTTT
LOC_Os03g15770
Os.45938.1.S1_at--587--3231Chr03:8679644..8679668 (25 bp)
CAAGCTTTTTCCTGACACCATTACT
LOC_Os03g15770
Os.45938.1.S1_at--398--2151Chr03:8679658..8679682 (25 bp)
ACACCATTACTCACATTAGCACACG
LOC_Os03g15770
Os.45938.1.S1_at--773--10451Chr03:8679673..8679697 (25 bp)
TTAGCACACGTGTTGCAGGAACAAT
LOC_Os03g15770
Os.45938.1.S1_at--1033--3191Chr03:8679949..8679969 (21 bp)
CAATGGGTTACTTAGCACCAGAGTA
LOC_Os03g15770
Os.45938.1.S1_at--896--6891Chr03:8679967..8679991 (25 bp)
GTATGCCTTGTTGGGACAGTTAACC
LOC_Os03g15770
Os.45938.1.S1_at--1143--7691Chr03:8680017..8680041 (25 bp)
GGGTCCTTGTCCTTGAAGTGATAAG
LOC_Os03g15770
Os.45938.1.S1_at--800--6171Chr03:8680364..8680388 (25 bp)
GAGGAGGAAATGCTTCGTTTCATCA
LOC_Os03g15770
Os.45938.1.S1_at--1114--9391Chr03:8680378..8680402 (25 bp)
TCGTTTCATCAAGGTGGCACTCGTG
LOC_Os03g15770
Os.45938.1.S1_at--872--391Chr03:8680475..8680499 (25 bp)
ATCAGTCTGGAGAACTTAGTCGCAC
LOC_Os03g15770
Os.45938.1.S1_at--508--7451Chr03:8680503..8680527 (25 bp)
GTGTGCTGAAAGAACCCCGCCATCA
LOC_Os03g15770
Target Sequence 
GAGATTTTGGACTGGCCAAGCTTTTTCCTGACACCATTACTCACATTAGCACACGTGTTGCAGGAACAATGGGTTACTTA
GCACCAGAGTATGCCTTGTTGGGACAGTTAACCAAGAAAGCAGATATATATAGTTTTGGGGTCCTTGTCCTTGAAGTGAT
AAGTGGTGAAAGCAGTAGCAAATCNACTTGGGGGCAAGATATGAATGTCCTTGTGGAATGGACATGGAAGCTTCGAGAAC
AAGGAAGGCTTTTGGAAATNGTTGATCCAGAACTGGAAGAATACCCAGAGGAGGAAATGCTTCGTTTCATCAAGGTGGCA
CTCGTGTGCACCCAGGCCACGTCCCAGCAGAGGCCATCCATGAAACNGGTGGTGGATATGCNATCTAACCCAACAGAAAT
CAGTCTGGAGAACTTAGTCGCACCNNGTGTGCTGAAAGAACCCCGCCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis