Browse Element(s) Details


Os.25396.1.S1_at

Description gb:AK111791.1
DB_XREF= gi:37988454
TID=Os.25396.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1012B02.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099E06, full insert sequence.
FL= gb:AK111791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1580011/11potassium channel tetramerisation domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15770Os.45938.1.S1_at11/113+8677906..8680663Protein kinase domain containing protein, expressed
LOC_Os03g15780Os.7114.1.S1_s_at11/113+8681841..8686829anthranilate synthase component I family protein, expressed
LOC_Os03g15790NANA3+8692118..8693695Zinc finger, C2H2 type family protein, expressed
LOC_Os03g15800Os.25396.1.S1_at11/113+8697171..8698887potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os03g15810OsAffx.25102.1.S1_at11/113+8699414..8707083ATPase, AAA family protein, expressed
LOC_Os03g15820OsAffx.22291.2.S1_at11/113+8707695..8708210hypothetical protein
LOC_Os03g15830OsAffx.30677.2.S1_at11/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.4.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.3.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15840Os.7313.1.S1_at11/113+8716182..8720250glycosyl transferase, group 1 family protein, expressed
LOC_Os03g15850Os.18826.2.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15850Os.18826.1.S1_at11/113+8720928..8723183Josephin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0008076cellular_componentvoltage-gated potassium channel complex
GO:0016020cellular_componentmembrane
GO:0005249molecular_functionvoltage-gated potassium channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25396.1.S1_at--737--7411Chr03:8697709..8697733 (25 bp)
GTGTTCTGCATTGCTACAAGTCTCA
LOC_Os03g15800
Os.25396.1.S1_at--312--2851Chr03:8697692..8697716 (25 bp)
AAGTCTCAGGTGTTTGTCAGCCGGA
LOC_Os03g15800
Os.25396.1.S1_at--167--6351Chr03:8697521..8697545 (25 bp)
GATGCTGACCGTGGTATGATACACA
LOC_Os03g15800
Os.25396.1.S1_at--878--5991Chr03:8697481..8697505 (25 bp)
GAGACCGCTTATTTGTTACCAGAGA
LOC_Os03g15800
Os.25396.1.S1_at--109--1631Chr03:8697421..8697445 (25 bp)
AGCTGGCTGGTGCTATCTCTCTATC
LOC_Os03g15800
Os.25396.1.S1_at--52--2591Chr03:8697337..8697361 (25 bp)
AACGTGAGTGTGCATTTTCTACCAT
LOC_Os03g15800
Os.25396.1.S1_at--224--9531Chr03:8697320..8697344 (25 bp)
TCTACCATAGCATCGCATTATTCAG
LOC_Os03g15800
Os.25396.1.S1_at--1107--3151Chr03:8697288..8697312 (25 bp)
AATTCCTCTCAAGTCATGATGCGGT
LOC_Os03g15800
Os.25396.1.S1_at--885--2231Chr03:8697220..8697244 (25 bp)
AAATCCCTTGGATGTTGGTAAGCTT
LOC_Os03g15800
Os.25396.1.S1_at--619--7831Chr03:8697204..8697228 (25 bp)
GGTAAGCTTATTTCATATCCCTTTT
LOC_Os03g15800
Os.25396.1.S1_at--654--9751Chr03:8697177..8697201 (25 bp)
TAATCCCTTAGCTTGAGGAGCTCAG
LOC_Os03g15800
Target Sequence 
GTGTTCTGCATTGCTACAAGTCTCAGGTGTTTGTCAGCCGGAAGGATGGATTGGAGGTTTGGTCTCGACTGGAAGAACAG
AGCAATGGCACAGCCAACTTGGCGGAGCAAACGAGAGCAAAGGAAAACATCAACAACGAAGGAATAAACGAGAACTGTTT
TAGGAGTTGCTATGTGGATACAGAAGANGATGCTGACCGTGGTATGATACACATCATGGAAGGGGGTGGAGACCGCTTAT
TTGTTACCAGAGAAGAAATGCAAGGCGTGGAGGTGTGGGAGACCTCCCAGCTGGCTGGTGCTATCTCTCTATCTCTTAGC
AGTTTNCTTGTCTGAACATGATTGACCTGTGGCAATTCAGGTGGTTNTATTAAACGTGAGTGTGCATTTTCTACCATAGC
ATCGCATTATTCAGTACTGAAAATTCCTCTCAAGTCATGATGCGGTAATGTTATAATTCTTGCTTCTGCATCNGTATTTT
NTGGTGATCAAATCCCTTGGATGTTGGTAAGCTTATTTCATATCCCTTTTCCTAATCCCTTAGCTTGAGGAGCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis