Browse Element(s) Details


OsAffx.30677.3.S1_x_at

Description tigr:9634.m03603
TID=OsAffx.30677.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3776011/11hAT family dimerisation domain containing protein
LOC_Os05g127808/11hAT family dimerisation domain containing protein
LOC_Os03g158308/11hypothetical protein
LOC_Os04g296307/11hAT family dimerisation domain containing protein
LOC_Os08g302706/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37690OsAffx.27981.1.S1_at11/116+22330489..22332909D-mannose binding lectin family protein
LOC_Os06g37700OsAffx.27982.1.S1_at11/116+22335719..22336522hypothetical protein
LOC_Os06g37710OsAffx.27983.1.S1_at11/116+22337043..22337318hypothetical protein
LOC_Os06g37720NANA6+22337743..22343829retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37730NANA6+22344146..22347086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37740OsAffx.15804.1.S1_at11/116+22348654..22349127hypothetical protein
LOC_Os06g37750Os.49844.1.S1_at9/116+22351090..22353760D-mannose binding lectin family protein, expressed
LOC_Os06g37760OsAffx.30677.3.S1_x_at11/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37760OsAffx.30677.4.S1_x_at7/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37770NANA6+22360236..22360676hypothetical protein
LOC_Os06g37780OsAffx.17964.1.S1_x_at1/116+22361324..22361713hypothetical protein
LOC_Os06g37790OsAffx.30677.1.S1_x_at5/116+22363636..22366815hypothetical protein
LOC_Os06g37790OsAffx.30677.5.S1_x_at4/116+22363636..22366815hypothetical protein
LOC_Os06g37790Os.53605.1.S1_at2/116+22363636..22366815hypothetical protein
LOC_Os06g37800OsAffx.5037.1.S1_at9/116+22369943..22370245hypothetical protein
LOC_Os06g37810OsAffx.15805.1.S1_at11/116+22374264..22374920resistance protein, putative
LOC_Os06g37820OsAffx.15806.1.S1_at11/116+22375669..22386249Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30677.3.S1_x_at--1048--6314Chr03:8714372..8714395 (24 bp)
GATGAACACATGCTTTCACATTCTT
LOC_Os03g15830
OsAffx.30677.3.S1_x_at--595--7415Chr03:8714412..8714436 (25 bp)
GTGTTGGATCACCTGTTCTTGGGAA
LOC_Os03g15830
OsAffx.30677.3.S1_x_at--647--1334Chr03:8714452..8714476 (25 bp)
AGAGTTTGCTTTATACAAGTCTCGA
LOC_Os03g15830
OsAffx.30677.3.S1_x_at--847--3771Chr06:22355755..22355779 (25 bp)
CTCGAAGGAGAACTGCACGGCAAAC
LOC_Os06g37760
OsAffx.30677.3.S1_x_at--162--3451Chr06:22355632..22355656 (25 bp)
CAGTATTGTCATCTATGGCCAGAGA
LOC_Os06g37760
OsAffx.30677.3.S1_x_at--1023--8433Chr08:18486987..18487011 (25 bp)
GGCCAGAGATTTCCTAGCAATACCC
LOC_Os08g30270
OsAffx.30677.3.S1_x_at--894--9654Chr03:8714637..8714661 (25 bp)
TCAGCACTGTATCTTCCGAATCAGC
LOC_Os03g15830
OsAffx.30677.3.S1_x_at--718--8275Chr03:8714675..8714699 (25 bp)
GGCAGGATACTTGGTGACACACGAA
LOC_Os03g15830
OsAffx.30677.3.S1_x_at--332--6714Chr03:8714700..8714724 (25 bp)
GTTCGTTAACACCTGAAATGCTTGA
LOC_Os03g15830
OsAffx.30677.3.S1_x_at--382--4934Chr03:8714719..8714743 (25 bp)
GCTTGAAGCTCTCATTTGTGCGAAA
LOC_Os03g15830
OsAffx.30677.3.S1_x_at--839--9835Chr03:8714755..8714779 (25 bp)
TAAAGCCAACGATCCTTTGATCAAT
LOC_Os03g15830
Target Sequence 
GATGAACACATGCTTTCACATTCTTGTGAAGGCAGCAACAGTGTTGGATCACCTGTTCTTGGGAAAAGAAAACTCGAGGA
AGAGTTTGCTTTATACAAGTCTCGAAGGAGAACTGCACGGCAAACGAAATCAGAATTTGCCATATATTTAGAAGAAGATG
TTGAGGAGGATAGTGAGAGTTTCGATGTTTTGGACTGGTGGAAGAGACATGCTCAAAAATTCCCAGTATTGTCATCTATG
GCCAGAGATTTCCTAGCAATACCCCTCAGCACTGTATCTTCCGAATCAGCATTCAGTTGTGGGGGCAGGATACTTGGTGA
CACACGAAGTTCGTTAACACCTGAAATGCTTGAAGCTCTCATTTGTGCGAAAGATTGGTTAATTAAAGCCAACGATCCTT
TGATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30677.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis