Browse Element(s) Details


OsAffx.27982.1.S1_at

Description tigr:9634.m03597
TID=OsAffx.27982.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3770011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37660Os.38745.1.S1_at11/116+22306184..22312291Serine/threonine protein phosphatase PP2A-1 catalytic subunit, putative, expressed
LOC_Os06g37660Os.38745.2.S1_at9/116+22306184..22312291Serine/threonine protein phosphatase PP2A-1 catalytic subunit, putative, expressed
LOC_Os06g37670NANA6+22314610..22317084D-mannose binding lectin family protein, expressed
LOC_Os06g37680Os.56076.1.S1_at11/116+22326749..22327918expressed protein
LOC_Os06g37690OsAffx.27981.1.S1_at11/116+22330489..22332909D-mannose binding lectin family protein
LOC_Os06g37700OsAffx.27982.1.S1_at11/116+22335719..22336522hypothetical protein
LOC_Os06g37710OsAffx.27983.1.S1_at11/116+22337043..22337318hypothetical protein
LOC_Os06g37720NANA6+22337743..22343829retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37730NANA6+22344146..22347086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37740OsAffx.15804.1.S1_at11/116+22348654..22349127hypothetical protein
LOC_Os06g37750Os.49844.1.S1_at9/116+22351090..22353760D-mannose binding lectin family protein, expressed
LOC_Os06g37760OsAffx.30677.3.S1_x_at11/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37760OsAffx.30677.4.S1_x_at7/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37770NANA6+22360236..22360676hypothetical protein
LOC_Os06g37780OsAffx.17964.1.S1_x_at1/116+22361324..22361713hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27982.1.S1_at--506--4511Chr06:22336047..22336071 (25 bp)
GCCGATCTGCCCCTACGAGGAATAT
LOC_Os06g37700
OsAffx.27982.1.S1_at--187--9851Chr06:22336060..22336084 (25 bp)
TACGAGGAATATCCGACCTTCGAAC
LOC_Os06g37700
OsAffx.27982.1.S1_at--377--3151Chr06:22336066..22336090 (25 bp)
GAATATCCGACCTTCGAACCCGACG
LOC_Os06g37700
OsAffx.27982.1.S1_at--1069--9331Chr06:22336079..22336103 (25 bp)
TCGAACCCGACGACCCAGTCTGGAT
LOC_Os06g37700
OsAffx.27982.1.S1_at--24--5791Chr06:22336087..22336111 (25 bp)
GACGACCCAGTCTGGATGCGGCAGA
LOC_Os06g37700
OsAffx.27982.1.S1_at--638--1411Chr06:22336329..22336353 (25 bp)
AGAAACGGTATATCCCGACGTGCCT
LOC_Os06g37700
OsAffx.27982.1.S1_at--1037--7851Chr06:22336335..22336359 (25 bp)
GGTATATCCCGACGTGCCTCTGGTC
LOC_Os06g37700
OsAffx.27982.1.S1_at--1043--9311Chr06:22336430..22336454 (25 bp)
TCGCCGTCGCGGAGGAACTACTGGT
LOC_Os06g37700
OsAffx.27982.1.S1_at--962--5471Chr06:22336444..22336468 (25 bp)
GAACTACTGGTTCAGCTGTGACGAC
LOC_Os06g37700
OsAffx.27982.1.S1_at--800--1951Chr06:22336449..22336473 (25 bp)
ACTGGTTCAGCTGTGACGACGAGAT
LOC_Os06g37700
OsAffx.27982.1.S1_at--769--7371Chr06:22336461..22336485 (25 bp)
GTGACGACGAGATGAAGCATCCCAA
LOC_Os06g37700
Target Sequence 
GCCGATCTGCCCCTACGAGGAATATCCGACCTTCGAACCCGACGACCCAGTCTGGATGCGGCAGAGCACGATGTACGCGG
AGGCGGTGCTGGAGCACTACAACGCCGCCGTCGACGTCGGCGGTGGCGGCGTCAAGTACGAGCTCGTCAGGGCCATCTTC
AGCGGCGCCATCTTCACCTGCAAGGCCGCCTACGGCCACCGGCTCTTCTTCGCCGAGGTGCGCAAGGACAAGAAACGGTA
TATCCCGACGTGCCTCTGGTCCCTGGACGACGAGGCCGACCGAGTCGGCGGCGCCGGCGCCGACCCGCAGGTGGACCTGC
CGGAGATCACCTCGCCGTCGCGGAGGAACTACTGGTTCAGCTGTGACGACGAGATGAAGCATCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis