Browse Element(s) Details


OsAffx.27981.1.S1_at

Description tigr:9634.m03596
TID=OsAffx.27981.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor protein kinase zmpk1 precursor (ec 2.7.1.37). (maize, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3769011/11D-mannose binding lectin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37650OsAffx.15803.1.S1_at11/116+22304094..22305544hypothetical protein
LOC_Os06g37660Os.38745.1.S1_at11/116+22306184..22312291Serine/threonine protein phosphatase PP2A-1 catalytic subunit, putative, expressed
LOC_Os06g37660Os.38745.2.S1_at9/116+22306184..22312291Serine/threonine protein phosphatase PP2A-1 catalytic subunit, putative, expressed
LOC_Os06g37670NANA6+22314610..22317084D-mannose binding lectin family protein, expressed
LOC_Os06g37680Os.56076.1.S1_at11/116+22326749..22327918expressed protein
LOC_Os06g37690OsAffx.27981.1.S1_at11/116+22330489..22332909D-mannose binding lectin family protein
LOC_Os06g37700OsAffx.27982.1.S1_at11/116+22335719..22336522hypothetical protein
LOC_Os06g37710OsAffx.27983.1.S1_at11/116+22337043..22337318hypothetical protein
LOC_Os06g37720NANA6+22337743..22343829retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37730NANA6+22344146..22347086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37740OsAffx.15804.1.S1_at11/116+22348654..22349127hypothetical protein
LOC_Os06g37750Os.49844.1.S1_at9/116+22351090..22353760D-mannose binding lectin family protein, expressed
LOC_Os06g37760OsAffx.30677.3.S1_x_at11/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37760OsAffx.30677.4.S1_x_at7/116+22355360..22359553hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27981.1.S1_at--802--3591Chr06:22332333..22332357 (25 bp)
CATTGCTCTAGGAGTCGCTAAGGGA
LOC_Os06g37690
OsAffx.27981.1.S1_at--60--4051Chr06:22332456..22332480 (25 bp)
CGATTTTGGCCTTGCGAAGCTGCTA
LOC_Os06g37690
OsAffx.27981.1.S1_at--1036--371Chr06:22332535..22332559 (25 bp)
TTAGCACCTGAGTGGGTTTCAAGTC
LOC_Os06g37690
OsAffx.27981.1.S1_at--208--9071Chr06:22332602..22332626 (25 bp)
TGCTTCTAGAATTACTCAAGGGAGC
LOC_Os06g37690
OsAffx.27981.1.S1_at--1006--131Chr06:22332612..22332636 (25 bp)
ATTACTCAAGGGAGCTCGTGTTTCG
LOC_Os06g37690
OsAffx.27981.1.S1_at--282--991Chr06:22332682..22332706 (25 bp)
AGGATAATTAGGACACTCGCGGAAA
LOC_Os06g37690
OsAffx.27981.1.S1_at--723--3791Chr06:22332697..22332721 (25 bp)
CTCGCGGAAAGTTTGAAGTCAGGTG
LOC_Os06g37690
OsAffx.27981.1.S1_at--235--7931Chr06:22332737..22332761 (25 bp)
GGATTGTTGAGTTCATTGACACCAG
LOC_Os06g37690
OsAffx.27981.1.S1_at--477--10751Chr06:22332752..22332776 (25 bp)
TTGACACCAGATTAAATGGCCGATT
LOC_Os06g37690
OsAffx.27981.1.S1_at--199--871Chr06:22332767..22332791 (25 bp)
ATGGCCGATTCAATGACTTGCAAGC
LOC_Os06g37690
OsAffx.27981.1.S1_at--561--2711Chr06:22332805..22332829 (25 bp)
AAGCTTGCTGTTTCATGCCTAGAGG
LOC_Os06g37690
Target Sequence 
CATTGCTCTAGGAGTCGCTAAGGGATTGGCATATCTTCATCATGAGTGCTTGGAGTGGGTCATCCACTGTGACGTGAAAC
CTGAAAATATACTGCTGGATGAAAACATGGAGCCAAAGATTGCCGATTTTGGCCTTGCGAAGCTGCTAAATAGAGGAGGA
TCCAAATTAAATGTGTCACGGATCCAAGGAACTAGAGGCTATTTAGCACCTGAGTGGGTTTCAAGTCTCCCGATAACAGC
AAAGGTTGATGTGTACAGCTTCGGAGTAGTGCTTCTAGAATTACTCAAGGGAGCTCGTGTTTCGGATCTTGAAACAAATG
AGGATGAAGAGGTGGAAATGGTCCTCGGGAGGATAATTAGGACACTCGCGGAAAGTTTGAAGTCAGGTGGGGATGGACAA
TCGTGGATTGTTGAGTTCATTGACACCAGATTAAATGGCCGATTCAATGACTTGCAAGCAAGAGCAATGATGAAGCTTGC
TGTTTCATGCCTAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis