Browse Element(s) Details


OsAffx.15804.1.S1_at

Description tigr:9634.m03601
TID=OsAffx.15804.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3774011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37680Os.56076.1.S1_at11/116+22326749..22327918expressed protein
LOC_Os06g37690OsAffx.27981.1.S1_at11/116+22330489..22332909D-mannose binding lectin family protein
LOC_Os06g37700OsAffx.27982.1.S1_at11/116+22335719..22336522hypothetical protein
LOC_Os06g37710OsAffx.27983.1.S1_at11/116+22337043..22337318hypothetical protein
LOC_Os06g37720NANA6+22337743..22343829retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37730NANA6+22344146..22347086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37740OsAffx.15804.1.S1_at11/116+22348654..22349127hypothetical protein
LOC_Os06g37750Os.49844.1.S1_at9/116+22351090..22353760D-mannose binding lectin family protein, expressed
LOC_Os06g37760OsAffx.30677.3.S1_x_at11/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37760OsAffx.30677.4.S1_x_at7/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37770NANA6+22360236..22360676hypothetical protein
LOC_Os06g37780OsAffx.17964.1.S1_x_at1/116+22361324..22361713hypothetical protein
LOC_Os06g37790OsAffx.30677.1.S1_x_at5/116+22363636..22366815hypothetical protein
LOC_Os06g37790OsAffx.30677.5.S1_x_at4/116+22363636..22366815hypothetical protein
LOC_Os06g37790Os.53605.1.S1_at2/116+22363636..22366815hypothetical protein
LOC_Os06g37800OsAffx.5037.1.S1_at9/116+22369943..22370245hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15804.1.S1_at--924--9591Chr06:22348784..22348808 (25 bp)
TCATCAGCGGCGTCATCATCACCTG
LOC_Os06g37740
OsAffx.15804.1.S1_at--938--411Chr06:22348798..22348822 (25 bp)
ATCATCACCTGCAGAGCCGACTACG
LOC_Os06g37740
OsAffx.15804.1.S1_at--184--5711Chr06:22348816..22348840 (25 bp)
GACTACGGCCACGTCAACTTCATAG
LOC_Os06g37740
OsAffx.15804.1.S1_at--978--8411Chr06:22348822..22348846 (25 bp)
GGCCACGTCAACTTCATAGCCAGGG
LOC_Os06g37740
OsAffx.15804.1.S1_at--821--8991Chr06:22348917..22348941 (25 bp)
TGAAGGTTGGATACCGACGTGCCTC
LOC_Os06g37740
OsAffx.15804.1.S1_at--851--6591Chr06:22348922..22348946 (25 bp)
GTTGGATACCGACGTGCCTCCGGTC
LOC_Os06g37740
OsAffx.15804.1.S1_at--720--9451Chr06:22349003..22349027 (25 bp)
TCGGCCGGTGGAAATCCCGGAGATC
LOC_Os06g37740
OsAffx.15804.1.S1_at--1048--8111Chr06:22349041..22349065 (25 bp)
GGACGGACTTCTGCTTCAGCTGTAA
LOC_Os06g37740
OsAffx.15804.1.S1_at--1093--10591Chr06:22349049..22349073 (25 bp)
TTCTGCTTCAGCTGTAACGGCGAGA
LOC_Os06g37740
OsAffx.15804.1.S1_at--199--4911Chr06:22349053..22349077 (25 bp)
GCTTCAGCTGTAACGGCGAGATTAA
LOC_Os06g37740
OsAffx.15804.1.S1_at--404--2572Chr06:22349064..22349088 (25 bp)
AACGGCGAGATTAAGCATCCCAAGG
LOC_Os06g37740
Target Sequence 
TCATCAGCGGCGTCATCATCACCTGCAGAGCCGACTACGGCCACGTCAACTTCATAGCCAGGGCCGCCGCCAGTGGCGGC
GGCACCTTGCGGCAGGAGGAGCGGCTCTTCTTCGCCGAGGTGCGTAACGACGGTGAAGGTTGGATACCGACGTGCCTCCG
GTCCCTGGACGACGAGGCCGACCGAGTTGGCGGCCTCGCCGCTGGCGACGACCCGCCGGTCGGCCGGTGGAAATCCCGGA
GATCACCTCGCCGTCGCGGACGGACTTCTGCTTCAGCTGTAACGGCGAGATTAAGCATCCCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis