Browse Element(s) Details


Os.49844.1.S1_at

Description gb:AK111890.1
DB_XREF= gi:37988553
TID=Os.49844.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071M18, full insert sequence.
FL= gb:AK111890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g377509/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37680Os.56076.1.S1_at11/116+22326749..22327918expressed protein
LOC_Os06g37690OsAffx.27981.1.S1_at11/116+22330489..22332909D-mannose binding lectin family protein
LOC_Os06g37700OsAffx.27982.1.S1_at11/116+22335719..22336522hypothetical protein
LOC_Os06g37710OsAffx.27983.1.S1_at11/116+22337043..22337318hypothetical protein
LOC_Os06g37720NANA6+22337743..22343829retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37730NANA6+22344146..22347086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37740OsAffx.15804.1.S1_at11/116+22348654..22349127hypothetical protein
LOC_Os06g37750Os.49844.1.S1_at9/116+22351090..22353760D-mannose binding lectin family protein, expressed
LOC_Os06g37760OsAffx.30677.3.S1_x_at11/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37760OsAffx.30677.4.S1_x_at7/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37770NANA6+22360236..22360676hypothetical protein
LOC_Os06g37780OsAffx.17964.1.S1_x_at1/116+22361324..22361713hypothetical protein
LOC_Os06g37790OsAffx.30677.1.S1_x_at5/116+22363636..22366815hypothetical protein
LOC_Os06g37790OsAffx.30677.5.S1_x_at4/116+22363636..22366815hypothetical protein
LOC_Os06g37790Os.53605.1.S1_at2/116+22363636..22366815hypothetical protein
LOC_Os06g37800OsAffx.5037.1.S1_at9/116+22369943..22370245hypothetical protein
LOC_Os06g37810OsAffx.15805.1.S1_at11/116+22374264..22374920resistance protein, putative
LOC_Os06g37820OsAffx.15806.1.S1_at11/116+22375669..22386249Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49844.1.S1_at--1162--5251Chr06:22353361..22353385 (25 bp)
GAATGCTAGCAGAGAATCTAACGTC
LOC_Os06g37750
Os.49844.1.S1_at--512--7931Chr06:22353406..22353430 (25 bp)
GGATTGCTGACTTCATTGACGCCAG
LOC_Os06g37750
Os.49844.1.S1_at--591--8931NONE
TGACGCCAGATTAAACACTCGGTTC
NONE
Os.49844.1.S1_at--930--2391NONE
AAACACTCGGTTCAACAACTTGCAA
NONE
Os.49844.1.S1_at--937--8071Chr06:22353473..22353497 (25 bp)
GGAGCTTGCAGTTTCATGTCTGGAA
LOC_Os06g37750
Os.49844.1.S1_at--898--9471Chr06:22353549..22353573 (25 bp)
TCTGTTGATGAAGCCGGTTGAACAA
LOC_Os06g37750
Os.49844.1.S1_at--655--6611Chr06:22353575..22353599 (25 bp)
GTTGGAGTCTTCTATTTCTGGGTGA
LOC_Os06g37750
Os.49844.1.S1_at--361--6031Chr06:22353601..22353625 (25 bp)
GAGATCTGTCGTTTGACTGTGTGGT
LOC_Os06g37750
Os.49844.1.S1_at--825--5731Chr06:22353615..22353639 (25 bp)
GACTGTGTGGTAAATTTTCTCGCAA
LOC_Os06g37750
Os.49844.1.S1_at--585--10311Chr06:22353630..22353654 (25 bp)
TTTCTCGCAAGATATCATCTACTAT
LOC_Os06g37750
Os.49844.1.S1_at--245--791Chr06:22353665..22353689 (25 bp)
ATGTGTCCAAGCCAGTGAATGTATC
LOC_Os06g37750
Target Sequence 
GAATGCTAGCAGAGAATCTAACGTCTGATGGGGATGAACAGTCATGGATTGCTGACTTCATTGACGCCAGATTAAACACT
CGGTTCAACAACTTGCAAGCAAGAGTGATGATGGAGCTTGCAGTTTCATGTCTGGAAGAAGACAGAGCCAGAAGACCCAC
CATGGAAAGTGTGGTGGAGATGCTTGTTTCTGTTGATGAAGCCGGTTGAACAATGTTGGAGTCTTCTATTTCTGGGTGAA
GAGATCTGTCGTTTGACTGTGTGGTAAATTTTCTCGCAAGATATCATCTACTATACTACTATAAATGTGTCCAAGCCAGT
GAATGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis