Browse Element(s) Details


OsAffx.15806.1.S1_at

Description tigr:9634.m03606
TID=OsAffx.15806.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AB013448 Pib
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3782011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37750Os.49844.1.S1_at9/116+22351090..22353760D-mannose binding lectin family protein, expressed
LOC_Os06g37760OsAffx.30677.3.S1_x_at11/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37760OsAffx.30677.4.S1_x_at7/116+22355360..22359553hAT family dimerisation domain containing protein
LOC_Os06g37770NANA6+22360236..22360676hypothetical protein
LOC_Os06g37780OsAffx.17964.1.S1_x_at1/116+22361324..22361713hypothetical protein
LOC_Os06g37790OsAffx.30677.1.S1_x_at5/116+22363636..22366815hypothetical protein
LOC_Os06g37790OsAffx.30677.5.S1_x_at4/116+22363636..22366815hypothetical protein
LOC_Os06g37790Os.53605.1.S1_at2/116+22363636..22366815hypothetical protein
LOC_Os06g37800OsAffx.5037.1.S1_at9/116+22369943..22370245hypothetical protein
LOC_Os06g37810OsAffx.15805.1.S1_at11/116+22374264..22374920resistance protein, putative
LOC_Os06g37820OsAffx.15806.1.S1_at11/116+22375669..22386249Leucine Rich Repeat family protein
LOC_Os06g37830OsAffx.30016.1.S1_at1/116+22387370..22389896transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g37840OsAffx.5038.1.S1_at11/116+22395865..22397671resistance protein, putative, expressed
LOC_Os06g37850Os.26886.2.S1_s_at4/116+22404668..22406765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g37850Os.26886.6.S1_s_at3/116+22404668..22406765transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15806.1.S1_at--854--3632Chr06:22376404..22376428 (25 bp)
CTTCGACGATCGACGTTCATCTGAT
LOC_Os06g37820
OsAffx.15806.1.S1_at--297--9091Chr06:22376162..22376351 (25 bp)
TGCTGCTCGACCAACTAGACTGGGA
LOC_Os06g37820
OsAffx.15806.1.S1_at--1115--2211Chr06:22376132..22376156 (25 bp)
ACAAGACTCTGTTCGACAGCCTGGA
LOC_Os06g37820
OsAffx.15806.1.S1_at--21--11Chr06:22376093..22376117 (25 bp)
GGTCTTTAACGGTGTTTGGTCCATG
LOC_Os06g37820
OsAffx.15806.1.S1_at--134--8611Chr06:22376077..22376101 (25 bp)
TGGTCCATGGGAGTCATTCTTCATC
LOC_Os06g37820
OsAffx.15806.1.S1_at--906--8191Chr06:22375973..22375997 (25 bp)
GGAAGGTGCTACATCGCCTCAAGTT
LOC_Os06g37820
OsAffx.15806.1.S1_at--487--5091Chr06:22375891..22375915 (25 bp)
GCACCTCCAGACTCTTGATATCAGA
LOC_Os06g37820
OsAffx.15806.1.S1_at--383--1191Chr06:22375814..22375838 (25 bp)
AGTATGTTCGTGCAGGTAACCCTGT
LOC_Os06g37820
OsAffx.15806.1.S1_at--884--4271Chr06:22375794..22375818 (25 bp)
CCTGTACCTGTACCACTGGATGATG
LOC_Os06g37820
OsAffx.15806.1.S1_at--1153--8191Chr06:22375756..22375780 (25 bp)
TGGAATCCTACGATTACGACCACCG
LOC_Os06g37820
OsAffx.15806.1.S1_at--355--431Chr06:22375699..22375723 (25 bp)
ATCATTATCAGAACCGTCGACGTCA
LOC_Os06g37820
Target Sequence 
CTTCGACGATCGACGTTCATCTGATCATCTCGCCGATCTCGTCCTCGTCAGCGTCAAAGACTCAAAGAGCCGCTGCCTGC
TGCTCGACCAACTAGACTGGGACAGGAACAAGACTCTGTTCGACAGCCTGGACTTGTTGAGGCTACGGTCTTTAACGGTG
TTTGGTCCATGGGAGTCATTCTTCATCTCCAACAAGATGGGAGTGCTTCGTGTGCTCGACCTGGAGGATGCATGCGATGT
AACTGATGTTGATGTCGAGAATATTGGGAAGGTGCTACATCGCCTCAAGTTCCTATCCCTAAGAGGACACAAAATCACTT
ATCTGCCGGATTCCTTCGGTGGGCTGAGGCACCTCCAGACTCTTGATATCAGATGCACCTCCATTATCAATCTTCCAACA
AGCATCACCAAGCTAAAGAAGCTGCAGTATGTTCGTGCAGGTAACCCTGTACCTGTACCACTGGATGATGATACCAGTAC
TGATGGAATCCTACGATTACGACCACCGCCACCAGAAGCAGCATCAGCAACAGCTTCCCCATCATTATCAGAACCGTCGA
CGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis