Browse Element(s) Details


Os.56076.1.S1_at

Description gb:AK109218.1
DB_XREF= gi:32994427
TID=Os.56076.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-E02, full insert sequence.
FL= gb:AK109218.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3768011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37650OsAffx.15803.1.S1_at11/116+22304094..22305544hypothetical protein
LOC_Os06g37660Os.38745.1.S1_at11/116+22306184..22312291Serine/threonine protein phosphatase PP2A-1 catalytic subunit, putative, expressed
LOC_Os06g37660Os.38745.2.S1_at9/116+22306184..22312291Serine/threonine protein phosphatase PP2A-1 catalytic subunit, putative, expressed
LOC_Os06g37670NANA6+22314610..22317084D-mannose binding lectin family protein, expressed
LOC_Os06g37680Os.56076.1.S1_at11/116+22326749..22327918expressed protein
LOC_Os06g37690OsAffx.27981.1.S1_at11/116+22330489..22332909D-mannose binding lectin family protein
LOC_Os06g37700OsAffx.27982.1.S1_at11/116+22335719..22336522hypothetical protein
LOC_Os06g37710OsAffx.27983.1.S1_at11/116+22337043..22337318hypothetical protein
LOC_Os06g37720NANA6+22337743..22343829retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37730NANA6+22344146..22347086retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g37740OsAffx.15804.1.S1_at11/116+22348654..22349127hypothetical protein
LOC_Os06g37750Os.49844.1.S1_at9/116+22351090..22353760D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56076.1.S1_at--1131--631Chr06:22327628..22327652 (25 bp)
ATGCACCAAGCTGGCGTTAGACCAC
LOC_Os06g37680
Os.56076.1.S1_at--939--6771Chr06:22327458..22327637 (25 bp)
GTTAGACCACATTGACATCGACCTG
LOC_Os06g37680
Os.56076.1.S1_at--1023--751Chr06:22327429..22327453 (25 bp)
ATGTCCAAGGCTTCGACAGCAACGC
LOC_Os06g37680
Os.56076.1.S1_at--672--2591Chr06:22327379..22327403 (25 bp)
AACGACGATTTGATCTACTTCCACG
LOC_Os06g37680
Os.56076.1.S1_at--774--10671Chr06:22327361..22327385 (25 bp)
TTCCACGTCGTGTTTACCGGCGAGA
LOC_Os06g37680
Os.56076.1.S1_at--1114--4951Chr06:22327058..22327082 (25 bp)
GCATCTTCTGCACCGGGATGTGGCA
LOC_Os06g37680
Os.56076.1.S1_at--1086--8711Chr06:22327028..22327052 (25 bp)
TGTCGGGTGGCTTCTGTGGATACAA
LOC_Os06g37680
Os.56076.1.S1_at--26--3971Chr06:22326987..22327011 (25 bp)
CGGAGATAGGCTCTTCTGCAATTAT
LOC_Os06g37680
Os.56076.1.S1_at--889--1691Chr06:22326961..22326985 (25 bp)
AGCCACTGAAGCTGCATGTCTCGTC
LOC_Os06g37680
Os.56076.1.S1_at--1137--691Chr06:22326868..22326892 (25 bp)
ATGAGTTGTCGCTTTGATAGATCGC
LOC_Os06g37680
Os.56076.1.S1_at--589--291Chr06:22326852..22326876 (25 bp)
ATAGATCGCGACGTAGCTGGCTGCC
LOC_Os06g37680
Target Sequence 
ATGCACCAAGCTGGCGTTAGACCACATTGACATCGACCTGGAGAATGTCCAAGGCTTCGACAGCAACGCCTTCACCATGA
AGCTGTTCGACGACAACGACGATTTGATCTACTTCCACGTCGTGTTTACCGGCGAGACGCCGGGACGGCGCGGCGGCGGC
GGCATGCGTTACTCCTTCGCCGAGATCGTCGGAAAAGACAAGCCGGAGGAGGTCAGAATGTGGAAAGAGATGGACGAAGA
AAGTGAAAATTGCACCGTGGAGAACTGCATCTTCTGCACCGGGATGTGGCACCCTCTGTCGGGTGGCTTCTGTGGATACA
AGAGGAAGAAGAAGAACCGGAGATAGGCTCTTCTGCAATTATCAGCCACTGAAGCTGCATGTCTCGTCGTCTCATCTTTC
TTCTAACTTTGTTTTCTAGAAATAAATTGGGTACCAATTAAGTTTAGTTGTTATCGATGAGTTGTCGCTTTGATAGATCG
CGACGTAGCTGGCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis