Browse Element(s) Details


OsAffx.15803.1.S1_at

Description tigr:9634.m03591
TID=OsAffx.15803.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3765011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37630OsAffx.15802.1.S1_at1/116+22279908..22285497transposon protein, putative, Mariner sub-class
LOC_Os06g37640OsAffx.15802.1.S1_at11/116+22291249..22300033expressed protein
LOC_Os06g37650OsAffx.15803.1.S1_at11/116+22304094..22305544hypothetical protein
LOC_Os06g37660Os.38745.1.S1_at11/116+22306184..22312291Serine/threonine protein phosphatase PP2A-1 catalytic subunit, putative, expressed
LOC_Os06g37660Os.38745.2.S1_at9/116+22306184..22312291Serine/threonine protein phosphatase PP2A-1 catalytic subunit, putative, expressed
LOC_Os06g37670NANA6+22314610..22317084D-mannose binding lectin family protein, expressed
LOC_Os06g37680Os.56076.1.S1_at11/116+22326749..22327918expressed protein
LOC_Os06g37690OsAffx.27981.1.S1_at11/116+22330489..22332909D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15803.1.S1_at--932--1891Chr06:22304124..22304148 (25 bp)
ACGTCGGGACTCCTTGAGTGTGACA
LOC_Os06g37650
OsAffx.15803.1.S1_at--861--6111Chr06:22304139..22304163 (25 bp)
GAGTGTGACAAAGAGTCCCTAGCAG
LOC_Os06g37650
OsAffx.15803.1.S1_at--239--8011Chr06:22304165..22304189 (25 bp)
GGAGGCAAATCGGTCGTGCCCTAGT
LOC_Os06g37650
OsAffx.15803.1.S1_at--810--7291Chr06:22304180..22304204 (25 bp)
GTGCCCTAGTCGGTATTGTGATTTG
LOC_Os06g37650
OsAffx.15803.1.S1_at--913--7631Chr06:22304236..22304260 (25 bp)
GGGAGTCTTGGATACACAAACACGA
LOC_Os06g37650
OsAffx.15803.1.S1_at--6--6291Chr06:22304299..22304323 (25 bp)
GATGTTTTGGCTCCTATCTTAATCA
LOC_Os06g37650
OsAffx.15803.1.S1_at--760--7951Chr06:22304641..22304665 (25 bp)
GGATCAAACTGGCTAGCACGCTCGT
LOC_Os06g37650
OsAffx.15803.1.S1_at--1067--1491Chr06:22304655..22304679 (25 bp)
AGCACGCTCGTATCTCATGAACCTT
LOC_Os06g37650
OsAffx.15803.1.S1_at--92--3671Chr06:22304730..22304754 (25 bp)
CTTAGTTCGCGCCAATACAGTTCTA
LOC_Os06g37650
OsAffx.15803.1.S1_at--722--3091Chr06:22304743..22304767 (25 bp)
AATACAGTTCTAGCACCATCAGCCA
LOC_Os06g37650
OsAffx.15803.1.S1_at--629--10211Chr06:22305485..22305509 (25 bp)
TATTTTCCTACAATCATTCCTGGTG
LOC_Os06g37650
Target Sequence 
ACGTCGGGACTCCTTGAGTGTGACAAAGAGTCCCTAGCAGAGGAGGCAAATCGGTCGTGCCCTAGTCGGTATTGTGATTT
GGGAGAAGATTGGAAGACATTGGAGCTAGGATGGGAGTCTTGGATACACAAACACGAGTTGGGAAGATGCAAGATAGGTC
TTGCGGTAGGCAAGAGATGTTTTGGCTCCTATCTTAATCAGGACGGATCAAACTGGCTAGCACGCTCGTATCTCATGAAC
CTTTGGACTTGCACTGGAGCTAAGCAGATCTCTCAGGCCGTTGTGTTCGTCGACTTAGTTCGCGCCAATACAGTTCTAGC
ACCATCAGCCAAGCGCGGATTTTTCATCAACAGCAATATATTCAAAGCCACAAACTATTTTCCTACAATCATTCCTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis