Browse Element(s) Details


Os.38745.2.S1_at

Description gb:AK106393.1
DB_XREF= gi:32991602
TID=Os.38745.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38745 (NCBI UniGene Cluster)
UG_TITLE=Protein phosphatase 2A mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F04, full insert sequence.
FL= gb:AK106393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g376609/11Serine/threonine protein phosphatase PP2A-1 catalytic subunit, putative, expressed
LOC_Os02g208702/11RNA helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37630OsAffx.15802.1.S1_at1/116+22279908..22285497transposon protein, putative, Mariner sub-class
LOC_Os06g37640OsAffx.15802.1.S1_at11/116+22291249..22300033expressed protein
LOC_Os06g37650OsAffx.15803.1.S1_at11/116+22304094..22305544hypothetical protein
LOC_Os06g37660Os.38745.1.S1_at11/116+22306184..22312291Serine/threonine protein phosphatase PP2A-1 catalytic subunit, putative, expressed
LOC_Os06g37660Os.38745.2.S1_at9/116+22306184..22312291Serine/threonine protein phosphatase PP2A-1 catalytic subunit, putative, expressed
LOC_Os06g37670NANA6+22314610..22317084D-mannose binding lectin family protein, expressed
LOC_Os06g37680Os.56076.1.S1_at11/116+22326749..22327918expressed protein
LOC_Os06g37690OsAffx.27981.1.S1_at11/116+22330489..22332909D-mannose binding lectin family protein
LOC_Os06g37700OsAffx.27982.1.S1_at11/116+22335719..22336522hypothetical protein
LOC_Os06g37710OsAffx.27983.1.S1_at11/116+22337043..22337318hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0009627biological_processsystemic acquired resistance
GO:0009926biological_processauxin polar transport
GO:0010113biological_processnegative regulation of systemic acquired resistance
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0000158molecular_functionprotein phosphatase type 2A activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38745.2.S1_at--66--10111Chr02:12344079..12344103 (25 bp)
TATGTAGCTCGCCACGTGCTAATTG
LOC_Os02g20870
Os.38745.2.S1_at--719--3791Chr02:12344072..12344096 (25 bp)
CTCGCCACGTGCTAATTGTTCATAA
LOC_Os02g20870
Os.38745.2.S1_at--980--3351Chr06:22307661..22307685 (25 bp)
CACCCAAGTGTGAGTTTCTATTCCT
LOC_Os06g37660
Os.38745.2.S1_at--523--7391Chr06:22307670..22307694 (25 bp)
GTGAGTTTCTATTCCTCTGATATGA
LOC_Os06g37660
Os.38745.2.S1_at--32--5471Chr06:22307705..22307736 (25 bp)
GAACTGTCTTCAATAATTGCCAATT
LOC_Os06g37660
Os.38745.2.S1_at--540--4391Chr06:22307723..22307747 (25 bp)
GCCAATTGCCAATTTTCAGCACAGT
LOC_Os06g37660
Os.38745.2.S1_at--1128--10371Chr06:22307735..22307759 (25 bp)
TTTTCAGCACAGTATCTCTATATTG
LOC_Os06g37660
Os.38745.2.S1_at--29--6911Chr06:22307746..22307770 (25 bp)
GTATCTCTATATTGCAATTTTTTGC
LOC_Os06g37660
Os.38745.2.S1_at--1036--5131Chr06:22307769..22307793 (25 bp)
GCAAAACATATATGACCATGCTGCA
LOC_Os06g37660
Os.38745.2.S1_at--476--5851Chr06:22307782..22307806 (25 bp)
GACCATGCTGCAAATCTTACCAAAT
LOC_Os06g37660
Os.38745.2.S1_at--298--8971Chr06:22307816..22307840 (25 bp)
TGAAATTGATCTTTTCTGCCTCCTT
LOC_Os06g37660
Target Sequence 
TATGTAGCTCGCCACGTGCTAATTGTTCATAAAGGGGGAGGTGGGGAGGGGGGAGGCGACGATGCCGTCGCACGCGGATC
TGGACCGGCAGATCTCGCAGCTGCGGGAGTGCAAGTTCCTGGGGGAGGCGGAGGTGAGGGCGCTGTGCGAGCAGGCGAAG
GCGATCCTCATGGAGGAGTGGAACGTGCAGCCGGTGCGGTGCCCCGTCACCGTCTGCGGCGACATCCACGGCCAGTTCTA
CGACCTCATCGAGCTCTTCCGCATCGGCGGGGACTCCCCCGACACCAACTACCTCTTCATGGGTGACTACGTCGACCGTG
GTTACTATTCAGTGGAGACTGTTACATTACTAGTGGCTCTTAAAGTCCGTTATAGAGACAGAATCACAATATTGAGAGGA
AATCACGAGAGCAGACAAATCACCCAAGTGTGAGTTTCTATTCCTCTGATATGAAAAAAACTCTGAACTGTCTTCAATAA
TTGCCAATTGCCAATTTTCAGCACAGTATCTCTATATTGCAATTTTTTGCAAAACATATATGACCATGCTGCAAATCTTA
CCAAATGATTATGCTTGAAATTGATCTTTTCTGCCTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38745.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis