Browse Element(s) Details


OsAffx.22291.2.S1_at

Description tigr:9631.m01533
TID=OsAffx.22291.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1582011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15780Os.7114.1.S1_s_at11/113+8681841..8686829anthranilate synthase component I family protein, expressed
LOC_Os03g15790NANA3+8692118..8693695Zinc finger, C2H2 type family protein, expressed
LOC_Os03g15800Os.25396.1.S1_at11/113+8697171..8698887potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os03g15810OsAffx.25102.1.S1_at11/113+8699414..8707083ATPase, AAA family protein, expressed
LOC_Os03g15820OsAffx.22291.2.S1_at11/113+8707695..8708210hypothetical protein
LOC_Os03g15830OsAffx.30677.2.S1_at11/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.4.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.3.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15840Os.7313.1.S1_at11/113+8716182..8720250glycosyl transferase, group 1 family protein, expressed
LOC_Os03g15850Os.18826.2.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15850Os.18826.1.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15860Os.9861.1.S1_at11/113+8728990..8731960peroxisomal membrane protein, putative, expressed
LOC_Os03g15870Os.9226.1.S1_a_at11/113+8732604..873506350S ribosomal protein L4, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22291.2.S1_at--457--6671Chr03:8707928..8707949 (22 bp)
GTTGCTTCAACTCCTAGTTCTCCTA
LOC_Os03g15820
OsAffx.22291.2.S1_at--614--5091Chr03:8707952..8707976 (25 bp)
GCACCGACACGTAGTTGACCTGTGG
LOC_Os03g15820
OsAffx.22291.2.S1_at--98--6951Chr03:8707962..8707986 (25 bp)
GTAGTTGACCTGTGGCGACATCGCC
LOC_Os03g15820
OsAffx.22291.2.S1_at--218--8451Chr03:8708042..8708066 (25 bp)
GGCCACACACCCGAAGAATGAGCGT
LOC_Os03g15820
OsAffx.22291.2.S1_at--143--5271Chr03:8708057..8708081 (25 bp)
GAATGAGCGTTGTGTTGTGCCCGCC
LOC_Os03g15820
OsAffx.22291.2.S1_at--1141--6591Chr03:8708091..8708115 (25 bp)
GATTGTGCGATGGAGCTGCTCAGCT
LOC_Os03g15820
OsAffx.22291.2.S1_at--1088--1591Chr03:8708104..8708128 (25 bp)
AGCTGCTCAGCTGCTCGAAGGAGAG
LOC_Os03g15820
OsAffx.22291.2.S1_at--922--2911Chr03:8708121..8708145 (25 bp)
AAGGAGAGCATGTGCACCGCTATCT
LOC_Os03g15820
OsAffx.22291.2.S1_at--1024--771Chr03:8708130..8708154 (25 bp)
ATGTGCACCGCTATCTGCACAGGCA
LOC_Os03g15820
OsAffx.22291.2.S1_at--246--9031Chr03:8708145..8708169 (25 bp)
TGCACAGGCAGCTACTCGTTCTGCG
LOC_Os03g15820
OsAffx.22291.2.S1_at--509--4851Chr03:8708155..8708179 (25 bp)
GCTACTCGTTCTGCGCCGTGTGCAA
LOC_Os03g15820
Target Sequence 
GTTGCTTCAACTCCTAGTTCTCCTACCGCACCGACACGTAGTTGACCTGTGGCGACATCGCCCCGCTCCCCCACCCCACT
CCCTGCCGTCGTGCGACTACGTCGCGGTGGCGATGGCGGCCACACACCCGAAGAATGAGCGTTGTGTTGTGCCCGCCGCC
GCCCTGGATTGTGCGATGGAGCTGCTCAGCTGCTCGAAGGAGAGCATGTGCACCGCTATCTGCACAGGCAGCTACTCGTT
CTGCGCCGTGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22291.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis