Browse Element(s) Details


Os.7313.1.S1_at

Description gb:AK105267.1
DB_XREF= gi:32990476
TID=Os.7313.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7313 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative sulfolipid synthase (OJ1012B02.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D07, full insert sequence.
FL= gb:AK105267.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1584011/11glycosyl transferase, group 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15790NANA3+8692118..8693695Zinc finger, C2H2 type family protein, expressed
LOC_Os03g15800Os.25396.1.S1_at11/113+8697171..8698887potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os03g15810OsAffx.25102.1.S1_at11/113+8699414..8707083ATPase, AAA family protein, expressed
LOC_Os03g15820OsAffx.22291.2.S1_at11/113+8707695..8708210hypothetical protein
LOC_Os03g15830OsAffx.30677.2.S1_at11/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.4.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.3.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15840Os.7313.1.S1_at11/113+8716182..8720250glycosyl transferase, group 1 family protein, expressed
LOC_Os03g15850Os.18826.2.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15850Os.18826.1.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15860Os.9861.1.S1_at11/113+8728990..8731960peroxisomal membrane protein, putative, expressed
LOC_Os03g15870Os.9226.1.S1_a_at11/113+8732604..873506350S ribosomal protein L4, chloroplast precursor, putative, expressed
LOC_Os03g15880Os.19476.1.S1_at11/113+8740551..8746062Coronatine-insensitive protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009247biological_processglycolipid biosynthesis
GO:0016036biological_processcellular response to phosphate starvation
GO:0046506biological_processsulfolipid biosynthesis
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0046510molecular_functionUDP-sulfoquinovose:DAG sulfoquinovosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7313.1.S1_at--394--1191Chr03:8719683..8719707 (25 bp)
AGTAGTGCTGGAGTCCATGGCTTCT
LOC_Os03g15840
Os.7313.1.S1_at--716--5491Chr03:8719828..8719852 (25 bp)
GAACAGCTCCTTTCGTCGAAGGTTC
LOC_Os03g15840
Os.7313.1.S1_at--1137--5931Chr03:8719907..8719931 (25 bp)
GAGCAGCCTCGAAGACAATACGCAA
LOC_Os03g15840
Os.7313.1.S1_at--373--2991Chr03:8719930..8719954 (25 bp)
AATGAGCACTACTGTACCGCAACGT
LOC_Os03g15840
Os.7313.1.S1_at--750--1791Chr03:8719945..8719969 (25 bp)
ACCGCAACGTTGTACTGGAGGAAGA
LOC_Os03g15840
Os.7313.1.S1_at--835--5471Chr03:8719979..8720003 (25 bp)
GAACTAACTAGGTTTCGCTTATCGA
LOC_Os03g15840
Os.7313.1.S1_at--1156--6551Chr03:8720002..8720026 (25 bp)
GATTCAGGAATCGTTCACCGCCGTC
LOC_Os03g15840
Os.7313.1.S1_at--41--4251Chr03:8720022..8720046 (25 bp)
CCGTCTCCACCTAGTTACTGTTAAT
LOC_Os03g15840
Os.7313.1.S1_at--417--51Chr03:8720064..8720088 (25 bp)
ATTGTATCCAACAGCAGCTCGCGAG
LOC_Os03g15840
Os.7313.1.S1_at--327--8311Chr03:8720096..8720120 (25 bp)
GGCTAGCTGCATTCATGTGTTCACA
LOC_Os03g15840
Os.7313.1.S1_at--486--8011Chr03:8720134..8720158 (25 bp)
GGATGGCCACTGACCAAAAGCTTGT
LOC_Os03g15840
Target Sequence 
AGTAGTGCTGGAGTCCATGGCTTCTGGAGTCCCAGTTGTCGCTGCTCGTGCTGGAGGTATACCTGATATAATACCCAAGG
ACAAGGAGGGTAAAACCAGTTTCTTGTTTACACCCGGGGATCTCGACGAGTGTGTGAGGAAGATCGAACAGCTCCTTTCG
TCGAAGGTTCTAAGAGAATCCATTGGAAGGGCTGCTAGGGAGGAGATGGAGAAGTGTGACTGGAGAGCAGCCTCGAAGAC
AATACGCAATGAGCACTACTGTACCGCAACGTTGTACTGGAGGAAGAAAATGGGCAGAACTAACTAGGTTTCGCTTATCG
ATTCAGGAATCGTTCACCGCCGTCTCCACCTAGTTACTGTTAATAACCAAAGAGTTTGTACATTGTATCCAACAGCAGCT
CGCGAGTTTGTGCGGCTAGCTGCATTCATGTGTTCACAAATCACAATCATGGGATGGCCACTGACCAAAAGCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis