Browse Element(s) Details


Os.9861.1.S1_at

Description gb:AK101498.1
DB_XREF= gi:32986707
TID=Os.9861.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1012B02.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043H11, full insert sequence.
FL= gb:AK101498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1586011/11peroxisomal membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15810OsAffx.25102.1.S1_at11/113+8699414..8707083ATPase, AAA family protein, expressed
LOC_Os03g15820OsAffx.22291.2.S1_at11/113+8707695..8708210hypothetical protein
LOC_Os03g15830OsAffx.30677.2.S1_at11/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.4.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.3.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15840Os.7313.1.S1_at11/113+8716182..8720250glycosyl transferase, group 1 family protein, expressed
LOC_Os03g15850Os.18826.2.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15850Os.18826.1.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15860Os.9861.1.S1_at11/113+8728990..8731960peroxisomal membrane protein, putative, expressed
LOC_Os03g15870Os.9226.1.S1_a_at11/113+8732604..873506350S ribosomal protein L4, chloroplast precursor, putative, expressed
LOC_Os03g15880Os.19476.1.S1_at11/113+8740551..8746062Coronatine-insensitive protein 1, putative, expressed
LOC_Os03g15890Os.12705.2.S1_x_at11/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15890Os.12705.1.S1_at10/113+8746627..8749601RNA recognition motif family protein, expressed
LOC_Os03g15900Os.12159.1.S1_s_at11/113+8755236..8765107SH3 domain containing protein, expressed
LOC_Os03g15900Os.12159.1.S1_at11/113+8755236..8765107SH3 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0015884biological_processfolic acid transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005778cellular_componentperoxisomal membrane
GO:0009507cellular_componentchloroplast
GO:0009941cellular_componentchloroplast envelope
GO:0005488molecular_functionbinding
GO:0008517molecular_functionfolic acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9861.1.S1_at--228--10491Chr03:8731094..8731118 (25 bp)
TTACATATCCTCTTCTAGTTGTGAA
LOC_Os03g15860
Os.9861.1.S1_at--45--6211Chr03:8731249..8731451 (25 bp)
GAGGCACCGCTACAAAGGCACATTT
LOC_Os03g15860
Os.9861.1.S1_at--648--7551Chr03:8731577..8731601 (25 bp)
GGGCGCTCGATTATTGGTAACCGGC
LOC_Os03g15860
Os.9861.1.S1_at--57--9811Chr03:8731594..8731618 (25 bp)
TAACCGGCAACACCAGCCTTGTTAA
LOC_Os03g15860
Os.9861.1.S1_at--1041--5331Chr03:8731619..8731643 (25 bp)
GAAGTTACCATCGAAGCCATTAAGA
LOC_Os03g15860
Os.9861.1.S1_at--647--10031Chr03:8731665..8731689 (25 bp)
TAGTTCCCTACTTATACCACAATTG
LOC_Os03g15860
Os.9861.1.S1_at--874--6231Chr03:8731702..8731726 (25 bp)
GATGGACAGAGTTGCCAAGCGCCCC
LOC_Os03g15860
Os.9861.1.S1_at--488--2671Chr03:8731718..8731742 (25 bp)
AAGCGCCCCTGTTAGGAGATATCAA
LOC_Os03g15860
Os.9861.1.S1_at--1068--9451Chr03:8731757..8731781 (25 bp)
TCTGATCGACTGTAGGCTCTCCAAA
LOC_Os03g15860
Os.9861.1.S1_at--629--10091Chr03:8731856..8731880 (25 bp)
TAGGCTATCTCTGTTGCTCGTGTAA
LOC_Os03g15860
Os.9861.1.S1_at--93--5171Chr03:8731935..8731959 (25 bp)
GCAAGCGCTAGTCATCTGTTCAGAT
LOC_Os03g15860
Target Sequence 
TTACATATCCTCTTCTAGTTGTGAAGGCAAGACTTCAGGTGAAGCAAATAATTGATGATGACAAGAGGCACCGCTACAAA
GGCACATTTGATGCGATCACAAAGATGATACGTTATGAAGGTTTGTCAGGGCTTTATAAAGGAATGAGCACNAAAAATCG
TACAAAGTGTTTTTGCTTCTGCTCTCCTTTTTATGATTAAGGAGGAACTGGTGAAGGGCGCTCGATTATTGGTAACCGGC
AACACCAGCCTTGTTAAGAAGTTACCATCGAAGCCATTAAGATGNATCTAGGTTGTACAAGAGTTAGTTCCCTACTTATA
CCACAATTGTTTCCATAAAGCGATGGACAGAGTTGCCAAGCGCCCCTGTTAGGAGATATCAAGTTATCTGTGAGACTCTG
ATCGACTGTAGGCTCTCCAAAAAAAGGAGATTAAAGATGTAGTACAATTACCACTGTGATTCTTGTAGGAACCAATAATG
ATGGTATATATTGGGTAGGCTATCTCTGTTGCTCGTGTAAAGTATACTGTTATGGAAGATTGAAACACTAGAAAATAAGT
TGGCAATGAGAATCGCAAGCGCTAGTCATCTGTTCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis