Browse Element(s) Details


OsAffx.25102.1.S1_at

Description tigr:9631.m01532
TID=OsAffx.25102.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATPase, AAA family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1581011/11ATPase, AAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15770Os.45938.1.S1_at11/113+8677906..8680663Protein kinase domain containing protein, expressed
LOC_Os03g15780Os.7114.1.S1_s_at11/113+8681841..8686829anthranilate synthase component I family protein, expressed
LOC_Os03g15790NANA3+8692118..8693695Zinc finger, C2H2 type family protein, expressed
LOC_Os03g15800Os.25396.1.S1_at11/113+8697171..8698887potassium channel tetramerisation domain-containing protein, putative, expressed
LOC_Os03g15810OsAffx.25102.1.S1_at11/113+8699414..8707083ATPase, AAA family protein, expressed
LOC_Os03g15820OsAffx.22291.2.S1_at11/113+8707695..8708210hypothetical protein
LOC_Os03g15830OsAffx.30677.2.S1_at11/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.4.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15830OsAffx.30677.3.S1_x_at8/113+8711820..8715143hypothetical protein
LOC_Os03g15840Os.7313.1.S1_at11/113+8716182..8720250glycosyl transferase, group 1 family protein, expressed
LOC_Os03g15850Os.18826.2.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15850Os.18826.1.S1_at11/113+8720928..8723183Josephin, putative, expressed
LOC_Os03g15860Os.9861.1.S1_at11/113+8728990..8731960peroxisomal membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25102.1.S1_at--1039--7491Chr03:8700197..8700221 (25 bp)
GTGGTAAAGATCCTGCACCTGCAAA
LOC_Os03g15810
OsAffx.25102.1.S1_at--1071--9011Chr03:8700178..8700202 (25 bp)
TGCAAAGAAGCACTCCAACCACGGA
LOC_Os03g15810
OsAffx.25102.1.S1_at--897--9331Chr03:8699958..8699982 (25 bp)
TCGCGTCCACTGATCTTCAAATACA
LOC_Os03g15810
OsAffx.25102.1.S1_at--329--431Chr03:8699874..8699898 (25 bp)
ATCTTTGTGCGCTCATTACTATAAG
LOC_Os03g15810
OsAffx.25102.1.S1_at--403--2371Chr03:8699838..8699862 (25 bp)
AAACCCACATGACCTGCACTTAGTA
LOC_Os03g15810
OsAffx.25102.1.S1_at--162--2391Chr03:8699791..8699815 (25 bp)
AAACTGCTATTGTCACATTTCCTGT
LOC_Os03g15810
OsAffx.25102.1.S1_at--4--10211Chr03:8699675..8699699 (25 bp)
TATTTTTACTTGCTCAGAGCCCCAG
LOC_Os03g15810
OsAffx.25102.1.S1_at--513--1371Chr03:8699660..8699684 (25 bp)
AGAGCCCCAGTTATGAACAGATCCT
LOC_Os03g15810
OsAffx.25102.1.S1_at--532--6371Chr03:8699641..8699665 (25 bp)
GATCCTGCTCGATTTTGTCTCAGAA
LOC_Os03g15810
OsAffx.25102.1.S1_at--1132--9811Chr03:8699615..8699639 (25 bp)
TAACACGTGGTTCTTTTTCTAATGG
LOC_Os03g15810
OsAffx.25102.1.S1_at--586--9111Chr03:8699570..8699594 (25 bp)
TGCTGTGGCGTTTGAGTTATTCCTC
LOC_Os03g15810
Target Sequence 
GTGGTAAAGATCCTGCACCTGCAAAGAAGCACTCCAACCACGGAATTAATTTCTTTGATAGGTTTAGAAAAGAGAGACCA
GTGGATGCAAAAGCTCGAAATGACGCAGGGCAACAAGTAGCTACAACTCTAAGAGACTCGCGTCCACTGATCTTCAAATA
CAATGAGGNNTNCNCNNNNNNTNNNNNANNANNANNNNANNNTNNNGATCTNNNNNTNNNNATCTTTGTGCGCTCATTAC
TATAAGGAATACATTGGAAACCCACATGACCTGCACTTAGTAGTGCCAAATAAACAGTAACTATAAACTGCTATTGTCAC
ATTTCCTGTTATTACTGAAGTTCATTACGTTATCTTACTTACATTGCTGTTAAATCTATATACTTACAGCACTAGACAAT
CATTTGATTCTCGAAGTGAGTATTTTTACTTGCTCAGAGCCCCAGTTATGAACAGATCCTGCTCGATTTTGTCTCAGAAT
TAACACGTGGTTCTTTTTCTAATGGGGACATAATGTTGCGCATAATGCTGTGGCGTTTGAGTTATTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis