Browse Element(s) Details


OsAffx.4433.1.S1_at

Description tigr:9633.m02348
TID=OsAffx.4433.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pumilio-family RNA binding repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2604010/11Pumilio-family RNA binding repeat containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26010Os.14919.1.S1_at3/115+15038528..15044635transposon protein, putative, Mutator sub-class
LOC_Os05g26010OsAffx.29313.1.S1_at1/115+15038528..15044635transposon protein, putative, Mutator sub-class
LOC_Os05g26020Os.37008.1.S1_at11/115+15046499..15047742expressed protein
LOC_Os05g26026OsAffx.27019.1.S1_at11/115+15049526..15050488hypothetical protein
LOC_Os05g26032Os.49990.1.S1_at11/115+15051313..15053406expressed protein
LOC_Os05g26040OsAffx.4433.1.S1_at10/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26040OsAffx.27020.1.S1_x_at2/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26040OsAffx.16356.1.S1_at1/115+15058203..15069250Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os05g26049OsAffx.27019.1.S1_at11/115+15080388..15081350hypothetical protein
LOC_Os05g26060OsAffx.14835.1.S1_at11/115+15083568..15084648retrotransposon protein, putative, unclassified
LOC_Os05g26070Os.20593.1.S1_x_at11/115+15086368..15088379expressed protein
LOC_Os05g26070Os.20593.2.S1_at7/115+15086368..15088379expressed protein
LOC_Os05g26070Os.5199.2.S1_x_at2/115+15086368..15088379expressed protein
LOC_Os05g26080OsAffx.9860.1.S1_x_at1/115+15091764..15092511transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g26090Os.46306.1.S1_x_at1/115+15093335..15094951transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4433.1.S1_at--494--7031Chr05:15068489..15068513 (25 bp)
GTACACTGAAGCCATGGATTCTTTT
LOC_Os05g26040
OsAffx.4433.1.S1_at--1017--1411Chr05:15068538..15068562 (25 bp)
AGAAATAGTCCAACAATCACCCCAG
LOC_Os05g26040
OsAffx.4433.1.S1_at--68--1811Chr05:15068556..15068657 (25 bp)
ACCCCAGCAAATTGGTGGTCTGTAC
LOC_Os05g26040
OsAffx.4433.1.S1_at--58--7811Chr05:15068649..15068673 (25 bp)
GGTCTGTACATGGAACTAGTGCTAA
LOC_Os05g26040
OsAffx.4433.1.S1_at--283--7331Chr05:15068746..15068858 (25 bp)
GTGCATTTGAGAGAGTCCATTCTAA
LOC_Os05g26040
OsAffx.4433.1.S1_at--619--2751NONE
AAGAACTAGATTAGGCTCACCGAAA
NONE
OsAffx.4433.1.S1_at--2--3031Chr05:15068890..15068914 (25 bp)
AATGCTCTGGTCTTTGTCATGTTCA
LOC_Os05g26040
OsAffx.4433.1.S1_at--344--1311Chr05:15069006..15069030 (25 bp)
AGATGATGATGCACCTGCACAACAA
LOC_Os05g26040
OsAffx.4433.1.S1_at--101--6351Chr05:15069040..15069064 (25 bp)
GATGCTCAGAGTGCAGCTGTCAGTC
LOC_Os05g26040
OsAffx.4433.1.S1_at--32--1411Chr05:15069107..15069131 (25 bp)
AGAAAGCATGCGTTGTGGTCGAAGA
LOC_Os05g26040
OsAffx.4433.1.S1_at--573--3111Chr05:15069181..15069205 (25 bp)
AATATTCCTTATGCAGATGGTTCAA
LOC_Os05g26040
Target Sequence 
GTACACTGAAGCCATGGATTCTTTTGGAACAACAATGGCTATTAGACAAAGAAATAGTCCAACAATCACCCCAGCAAATT
GGTGGTCTGTACATGGAACTAGTGCTAAGGATTTGAGGAAGATGGCTATCAGGATTTTAAGTTTGACTTGTAGTTTCATT
TGCATGCGAAAGAAATTGGAGTGCATTTGAGAGAGTCCATTCTAAGAAAAGAACTAGATTAGGCTCACCGAAAATTGAAT
GCTCTGGTCTTTGTCATGTTCAACAAGAGGCTGAAATCAAAATATTCTCAAAAGGATAGGGATCCATTAGTTGCTAAATT
TATAGATGATGATCCACCAAATGAATGGATTATAGATGATGATGCACCTGCACAACAACCAGAAGTTGATGCTCAGAGTG
CAGCTGTCAGTCGAAAGAGAAGATTAATACATAAAAAATCATCAAGTAAAGCAAAGAAAGCATGCGTTGTGGTCGAAGAG
GAGGAGGAAGAATTTCAATCTTCTAACAGTGAACATGAAGAGGAGGAAAATATTCCTTATGCAGATGGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis