Browse Element(s) Details


Os.21300.1.S1_at

Description gb:AK100476.1
DB_XREF= gi:32985685
TID=Os.21300.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023094C07, full insert sequence.
FL= gb:AK100476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2597411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25900OsAffx.27017.1.S1_at11/115+14988958..14989182hypothetical protein
LOC_Os05g25910Os.55107.1.S1_at11/115+14991347..14992396uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g25920Os.51741.1.S1_at3/115+14999892..15000119hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25930OsAffx.30006.3.S1_x_at11/115+15003340..15004039hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25940OsAffx.4432.1.S1_x_at11/115+15004563..15005344hypothetical protein
LOC_Os05g25950Os.37008.1.S1_at3/115+15006872..15008055expressed protein
LOC_Os05g25960OsAffx.27019.2.S1_at11/115+15011800..15013503No apical meristem protein
LOC_Os05g25974Os.21300.1.S1_at11/115+15014135..15017030expressed protein
LOC_Os05g25974Os.21300.2.S1_x_at8/115+15014135..15017030expressed protein
LOC_Os05g25990NANA5+15018231..15019229hypothetical protein
LOC_Os05g26000NANA5+15020805..15029085retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g26010Os.14919.1.S1_at3/115+15038528..15044635transposon protein, putative, Mutator sub-class
LOC_Os05g26010OsAffx.29313.1.S1_at1/115+15038528..15044635transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21300.1.S1_at--339--1011Chr05:15014709..15014733 (25 bp)
AGGTTCATGATGTGGCTCTACAGCC
LOC_Os05g25974
Os.21300.1.S1_at--243--6051Chr05:15014652..15014676 (25 bp)
GAGATAGGGCAATTCTCGGCTGCCT
LOC_Os05g25974
Os.21300.1.S1_at--918--6011Chr05:15014582..15014606 (25 bp)
GAGAGATGCTGAGGCACTCCAGACT
LOC_Os05g25974
Os.21300.1.S1_at--279--5931Chr05:15014554..15014578 (25 bp)
GAGCACCATTGAGAGTCTGTTTTTT
LOC_Os05g25974
Os.21300.1.S1_at--1113--8771Chr05:15014537..15014561 (25 bp)
TGTTTTTTCATGTGACTAGCCCTGA
LOC_Os05g25974
Os.21300.1.S1_at--1144--2371Chr05:15014475..15014499 (25 bp)
AAACTGGCCCCACGATGAAGTCTGT
LOC_Os05g25974
Os.21300.1.S1_at--293--8711Chr05:15014453..15014477 (25 bp)
TGTCCACTCTGCCAGCGAGATAATG
LOC_Os05g25974
Os.21300.1.S1_at--669--4271Chr05:15014415..15014439 (25 bp)
CCTGTTCGTGGCCTGTAATTTTACA
LOC_Os05g25974
Os.21300.1.S1_at--530--6891Chr05:15014257..15014281 (25 bp)
GTATACATCCTGGTACTTGACATGA
LOC_Os05g25974
Os.21300.1.S1_at--58--3131Chr05:15014233..15014257 (25 bp)
AATTAGGGAGCTGCAGCGCTGTTTT
LOC_Os05g25974
Os.21300.1.S1_at--612--10272Chr05:15014211..15014235 (25 bp)
TTTGCAGCTGCTAGCATGTTCTGTA
LOC_Os05g25974
Target Sequence 
AGGTTCATGATGTGGCTCTACAGCCTAATGCAGATGCAATCAGATTGAAACTGACTGGAGATAGGGCAATTCTCGGCTGC
CTCGGCANATNNTNTTTTCTTCATGGCCNAAAGAGGACTGCCCNTTATGGAGAGATGCTGAGGCACTCCAGACTCCAGAG
CACCATTGAGAGTCTGTTTTTTCATGTGACTAGCCCTGAAAGGAAGATGCCTAACGGCAGACAATCTGGCGAAGAGAAAC
TGGCCCCACGATGAAGTCTGTCCACTCTGCCAGCGAGATAATGAGGACTGCCACCACCTGTTCGTGGCCTGTAATTTTAC
AATCGCGGTTTGGCGGTTGATGAGGAGCTGGATTAATGTTGACTTTCCAATCCCNTGGTGATGAAGATCAACCGCTCACA
GACNGGTAGCTTCGGGCCNAGGATGCATTTTCATGTAATGTAAGATNTAATTGTAAGTATACATCCTGGTACTTGACATG
AATTAGGGAGCTGCAGCGCTGTTTTGCAGCTGCTAGCATGTTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis