Browse Element(s) Details


OsAffx.4429.1.S1_at

Description tigr:9633.m02315
TID=OsAffx.4429.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable wrky transcription factor 55 (wrky dna-binding protein 55). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2570011/11WRKY DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25660OsAffx.18481.2.A1_at11/115+14843308..14844057hypothetical protein
LOC_Os05g25670NANA5+14857291..14857590hypothetical protein
LOC_Os05g25680Os.49598.1.S1_at4/115+14859041..14859619hypothetical protein
LOC_Os05g25690NANA5+14862924..14864351retrotransposon protein, putative, unclassified
LOC_Os05g25700OsAffx.4429.1.S1_at11/115+14868926..14874720WRKY DNA binding domain containing protein
LOC_Os05g25700Os.7949.1.S1_at1/115+14868926..14874720WRKY DNA binding domain containing protein
LOC_Os05g25710OsAffx.27013.1.S1_at11/115+14878501..14878863hypothetical protein
LOC_Os05g25720OsAffx.31069.3.S1_at11/115+14882761..14885793hypothetical protein
LOC_Os05g25720OsAffx.31069.2.S1_x_at1/115+14882761..14885793hypothetical protein
LOC_Os05g25740OsAffx.31869.1.S1_at9/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.5.S1_x_at7/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.2.S1_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.3.S1_s_at1/115+14895338..14896447retrotransposon protein, putative, unclassified
LOC_Os05g25740OsAffx.31869.4.S1_x_at1/115+14895338..14896447retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005730cellular_componentnucleolus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4429.1.S1_at--756--9451Chr05:14871699..14871718 (20 bp)
TCGGCTCCAGATATCCCAGGAGCTA
LOC_Os05g25700
OsAffx.4429.1.S1_at--829--7771Chr05:14874188..14874212 (25 bp)
GGTGCACTCACAAGAACTACTACGG
LOC_Os05g25700
OsAffx.4429.1.S1_at--127--2511Chr05:14874202..14874226 (25 bp)
AACTACTACGGGTGCGAGGCGAAGA
LOC_Os05g25700
OsAffx.4429.1.S1_at--68--9951Chr05:14874262..14874286 (25 bp)
TACGAGGTCACCTACTGCGGCAACC
LOC_Os05g25700
OsAffx.4429.1.S1_at--321--4411Chr05:14874337..14874361 (25 bp)
GCCACTTCGGTGACAAACTCTCCGA
LOC_Os05g25700
OsAffx.4429.1.S1_at--928--9451Chr05:14874377..14874401 (25 bp)
TCGGCCAGGACTTCGTCATGGCGCC
LOC_Os05g25700
OsAffx.4429.1.S1_at--954--1751Chr05:14874464..14874488 (25 bp)
ACCTCGGCATCGGATGGCCGATGAC
LOC_Os05g25700
OsAffx.4429.1.S1_at--879--6111Chr05:14874517..14874541 (25 bp)
GAGGGAAGCACTAGCACTACCGCCA
LOC_Os05g25700
OsAffx.4429.1.S1_at--800--1791Chr05:14874541..14874565 (25 bp)
ACCGCGCCGCAGGTGACGACAATGG
LOC_Os05g25700
OsAffx.4429.1.S1_at--1041--5051Chr05:14874592..14874616 (25 bp)
GCAGCAGCTAGGGACGCGGACCATT
LOC_Os05g25700
OsAffx.4429.1.S1_at--97--3691Chr05:14874598..14874622 (25 bp)
GCTAGGGACGCGGACCATTACCCGG
LOC_Os05g25700
Target Sequence 
TCGGCTCCAGATATCCCAGGAGCTACTACCGGTGCACTCACAAGAACTACTACGGGTGCGAGGCGAAGAAGAAGGTGCAG
CGGCTGGACGACGACCCCTTCACCTACGAGGTCACCTACTGCGGCAACCACACCTGCCTCACCTCCACCACGCCGCTGCT
CACACTCCCCGCCGCCGCCGCCACTTCGGTGACAAACTCTCCGACCGCCGCCGCCGTGCTCGGCCAGGACTTCGTCATGG
CGCCCGCCGCCGATCAGCAGCCGCCCCAGCACCAGCAGGCGCAGCCGCCGCTGTCCACGTCCATCCACCTCGGCATCGGA
TGGCCGATGACGCCGGCCAGCCTCGCCGGCGCCGTAGGCGAGGGAAGCACTAGCACTACCGCCACCGCGCCGCAGGTGAC
GACAATGGGCGCCACGGCGGCCGGCGGCGGCGGTGCAGCAGCTAGGGACGCGGACCATTACCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis