Browse Element(s) Details


OsAffx.27012.1.S1_at

Description tigr:9633.m02307
TID=OsAffx.27012.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2562010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25580NANA5+14788494..14791639F-box domain containing protein, expressed
LOC_Os05g25590OsAffx.24052.1.S1_at1/115+14795825..14796469hypothetical protein
LOC_Os05g25600Os.14637.1.S1_at11/115+14800284..14808285expressed protein
LOC_Os05g25600Os.46613.1.S2_at1/115+14800284..14808285expressed protein
LOC_Os05g25600Os.38273.2.S1_x_at1/115+14800284..14808285expressed protein
LOC_Os05g25610OsAffx.29697.1.S1_at1/115+14809903..14813564transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25620OsAffx.27012.1.S1_at10/115+14815312..14816168expressed protein
LOC_Os05g25630OsAffx.14830.1.S1_at11/115+14819319..14819806inhibitor I family protein
LOC_Os05g25640Os.53884.1.S1_at11/115+14821903..14826462Trans-cinnamate 4-monooxygenase, putative, expressed
LOC_Os05g25650NANA5+14828581..14828877expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27012.1.S1_at--570--4131Chr05:14815367..14815391 (25 bp)
CGCGGGACACCAACGTGGTGGCCTC
LOC_Os05g25620
OsAffx.27012.1.S1_at--591--7072Chr05:14815473..14815497 (25 bp)
GTCGGTGAGGTCGTACGCGAAGGCC
LOC_Os05g25620
OsAffx.27012.1.S1_at--93--1591Chr05:14815688..14815712 (25 bp)
AGCTCATGCGGCTGATCGGCATGCC
LOC_Os05g25620
OsAffx.27012.1.S1_at--563--491Chr05:14815702..14815845 (25 bp)
ATCGGCATGCCGGAGGTTTACACTC
LOC_Os05g25620
OsAffx.27012.1.S1_at--987--6151Chr05:14815834..14815857 (24 bp)
GAGGTTTACACTCCAGTGGAATCAC
LOC_Os05g25620
OsAffx.27012.1.S1_at--431--1091Chr05:14815847..14815871 (25 bp)
AGTGGAATCACTGAGATCGAAGGAA
LOC_Os05g25620
OsAffx.27012.1.S1_at--93--2891Chr05:14815888..14815912 (25 bp)
AAGGGATTGCGCACTCTGGTTCGCT
LOC_Os05g25620
OsAffx.27012.1.S1_at--153--2011Chr05:14815900..14816092 (25 bp)
ACTCTGGTTCGCTGGATACTGCATC
LOC_Os05g25620
OsAffx.27012.1.S1_at--1065--4711NONE
GCTGGATACTGCATCGTCATTGCTG
NONE
OsAffx.27012.1.S1_at--221--4011Chr05:14816092..14816116 (25 bp)
CGTCATTGCTGGATGATGTTAGGGA
LOC_Os05g25620
OsAffx.27012.1.S1_at--337--7631Chr05:14816113..14816137 (25 bp)
GGGAGAGTTGCTGTGATCGGGAATC
LOC_Os05g25620
Target Sequence 
CGCGGGACACCAACGTGGTGGCCTCCCCAGCCGCGGCGCTCGCCGGGAAGGCGGCGAAGGGGAAGGGGAAGGGGAAGGGG
ACGGCGAGGGCGGCGTCGTCTCCGCCGTCGGTGAGGTCGTACGCGAAGGCCGGGGGATGCAGGGTGGGGTTGAGGGAGGT
GTCGCTGGCGGAGGAGCTGGAGAAGGCGCGGGAGCGGCGGGGCCGGATGCGCGCGGCGAGGGAGGTGACGGGGAGGGCCC
TGGAGGAGCGCGCCGCGGCGCTGCGGCGGGAGGCGAGGGAGTGGGAGCGGCGGGCCGACGAGCAGCGGCGCCTCGTCGCG
GAGCTCATGCGGCTGATCGGCATGCCGGAGGTTTACACTCCAGTGGAATCACTGAGATCGAAGGAAGAGAGGAAGAGAAA
GGAAGGGATTGCGCACTCTGGTTCGCTGGATACTGCATCGTCATTGCTGGATGATGTTAGGGAGAGTTGCTGTGATCGGG
AATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis