Browse Element(s) Details


OsAffx.14828.1.S1_at

Description tigr:9633.m02299
TID=OsAffx.14828.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2553011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25480OsAffx.14827.1.S1_at11/115+14738266..14740584expressed protein
LOC_Os05g25490OsAffx.14625.1.S1_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25490OsAffx.14625.1.S1_x_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25500OsAffx.4426.1.S1_at11/115+14747224..14747754hypothetical protein
LOC_Os05g25510OsAffx.4427.1.S1_at11/115+14748062..14748397hypothetical protein
LOC_Os05g25520NANA5+14754772..14755125hypothetical protein
LOC_Os05g25530OsAffx.14828.1.S1_at11/115+14759455..14759947hypothetical protein
LOC_Os05g25540Os.54960.1.S1_at11/115+14762435..14765963Protein kinase domain containing protein, expressed
LOC_Os05g25550Os.52873.1.S1_a_at11/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25550OsAffx.5813.1.S1_x_at2/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25550Os.8093.2.S1_x_at1/115+14770253..14774757ATPase 7, plasma membrane-type, putative, expressed
LOC_Os05g25560OsAffx.14829.1.S1_x_at11/115+14776360..14778210endo-1,4-beta-xylanase, putative
LOC_Os05g25560OsAffx.14829.2.S1_x_at3/115+14776360..14778210endo-1,4-beta-xylanase, putative
LOC_Os05g25570OsAffx.380.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25570OsAffx.25972.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified
LOC_Os05g25570OsAffx.15069.1.S1_at1/115+14780035..14785167retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14828.1.S1_at--827--10231Chr05:14759517..14759541 (25 bp)
TTTGGCGAGCAGTGACACGACCACA
LOC_Os05g25530
OsAffx.14828.1.S1_at--1135--10111Chr05:14759706..14759730 (25 bp)
TATGCACGGCAAGGGTTCATGGAAC
LOC_Os05g25530
OsAffx.14828.1.S1_at--897--8151Chr05:14759726..14759750 (25 bp)
GGAACCACGGTTCCCACTACCATGG
LOC_Os05g25530
OsAffx.14828.1.S1_at--919--9971Chr05:14759743..14759767 (25 bp)
TACCATGGGTGCTCGGCTCCGACGT
LOC_Os05g25530
OsAffx.14828.1.S1_at--954--8293Chr05:14759757..14759781 (25 bp)
GGCTCCGACGTGGAGGCTTAGACCA
LOC_Os05g25530
OsAffx.14828.1.S1_at--181--6211Chr05:14759769..14759793 (25 bp)
GAGGCTTAGACCACATGATAGGGTG
LOC_Os05g25530
OsAffx.14828.1.S1_at--621--7731Chr05:14759790..14759814 (25 bp)
GGTGGAACGTTGTACATGGCCTTAT
LOC_Os05g25530
OsAffx.14828.1.S1_at--957--851Chr05:14759805..14759829 (25 bp)
ATGGCCTTATATCACCACAGACCTA
LOC_Os05g25530
OsAffx.14828.1.S1_at--277--391Chr05:14759815..14759839 (25 bp)
ATCACCACAGACCTACAAGTTTCAT
LOC_Os05g25530
OsAffx.14828.1.S1_at--745--1191Chr05:14759832..14759856 (25 bp)
AGTTTCATACTCAGGCAAAAGCACC
LOC_Os05g25530
OsAffx.14828.1.S1_at--332--2431Chr05:14759889..14759913 (25 bp)
AAAAGCACCTTTCACCTCATAGAAG
LOC_Os05g25530
Target Sequence 
TTTGGCGAGCAGTGACACGACCACAACGGTGGCGGTATGCACGGCAAGGGTTCATGGAACCACGGTTCCCACTACCATGG
GTGCTCGGCTCCGACGTGGAGGCTTAGACCACATGATAGGGTGGAACGTTGTACATGGCCTTATATCACCACAGACCTAC
AAGTTTCATACTCAGGCAAAAGCACCTTTCTCAGCAAAACAGGCAGAAACATACAGGCAAAAGCACCTTTCACCTCATAG
AAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis