Browse Element(s) Details


OsAffx.14827.1.S1_at

Description tigr:9633.m02294
TID=OsAffx.14827.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=(1-4)-beta-mannan endohydrolase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2548011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25440NANA5+14715765..14716001hypothetical protein
LOC_Os05g25450Os.18927.1.S1_at11/115+14717443..14721558protein kinase family protein, putative, expressed
LOC_Os05g25460OsAffx.27009.1.S1_at11/115+14722708..14723435hypothetical protein
LOC_Os05g25470Os.41695.15.S1_s_at11/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.3.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.5.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.2.S1_x_at9/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25480OsAffx.14827.1.S1_at11/115+14738266..14740584expressed protein
LOC_Os05g25490OsAffx.14625.1.S1_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25490OsAffx.14625.1.S1_x_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25500OsAffx.4426.1.S1_at11/115+14747224..14747754hypothetical protein
LOC_Os05g25510OsAffx.4427.1.S1_at11/115+14748062..14748397hypothetical protein
LOC_Os05g25520NANA5+14754772..14755125hypothetical protein
LOC_Os05g25530OsAffx.14828.1.S1_at11/115+14759455..14759947hypothetical protein
LOC_Os05g25540Os.54960.1.S1_at11/115+14762435..14765963Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14827.1.S1_at--144--7131Chr05:14740011..14740117 (25 bp)
GTCTACCCGGACACTTGGCTGCCGG
LOC_Os05g25480
OsAffx.14827.1.S1_at--126--5051Chr05:14740137..14740161 (25 bp)
GCAGCTGAGGTTCGCGACGTCGTGG
LOC_Os05g25480
OsAffx.14827.1.S1_at--40--10511Chr05:14740258..14740282 (25 bp)
TTCAACGCGACGTCGAGGGACGCGT
LOC_Os05g25480
OsAffx.14827.1.S1_at--882--4091Chr05:14740265..14740289 (25 bp)
CGACGTCGAGGGACGCGTTCATCGA
LOC_Os05g25480
OsAffx.14827.1.S1_at--182--8771Chr05:14740295..14740319 (25 bp)
TGTATGGCGCGATGCTGCGGTCGAC
LOC_Os05g25480
OsAffx.14827.1.S1_at--506--10631Chr05:14740363..14740387 (25 bp)
TTCCCGGAGGGCACGGATTACATGG
LOC_Os05g25480
OsAffx.14827.1.S1_at--394--1891Chr05:14740375..14740399 (25 bp)
ACGGATTACATGGACGACGGCTACG
LOC_Os05g25480
OsAffx.14827.1.S1_at--799--1991Chr05:14740448..14740472 (25 bp)
ACTCCAGGCGGCTGCAGTCGTTCAA
LOC_Os05g25480
OsAffx.14827.1.S1_at--283--1151Chr05:14740463..14740487 (25 bp)
AGTCGTTCAACTCCCGGTGCGCGTG
LOC_Os05g25480
OsAffx.14827.1.S1_at--929--7571Chr05:14740500..14740524 (25 bp)
GGGCTGCAACAAGAGGGACAACGAC
LOC_Os05g25480
OsAffx.14827.1.S1_at--429--2211Chr05:14740508..14740532 (25 bp)
ACAAGAGGGACAACGACACGGCTGA
LOC_Os05g25480
Target Sequence 
GTCTACCCGGACACTTGGCTGCCGGCGGGCGCGACGAAGGAGGCGCAGCTGAGGTTCGCGACGTCGTGGGTGGAGGCGCA
CATCGCGGACGCCGAGGGCGCGCTCGGCGGCATGCCGGTGCTGTTCGCGGAGTTCGGGGTGTCCACGAGGGGCGCCCGGG
CGGCGTTCAACGCGACGTCGAGGGACGCGTTCATCGAGGCGGTGTATGGCGCGATGCTGCGGTCGACGCGGCGCGGCGGC
GGCGGCGCGGGGGCGCTGCTGTGGCAGGTGTTCCCGGAGGGCACGGATTACATGGACGACGGCTACGCCGTCGTGCTGCC
CCGGGCGGCGGCCACCGCCGGGATCGTGGCGGCGCACTCCAGGCGGCTGCAGTCGTTCAACTCCCGGTGCGCGTGGAGCT
GCCGCTGGGGCTGCAACAAGAGGGACAACGACACGGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis