Browse Element(s) Details


Os.18927.1.S1_at

Description gb:AK120223.1
DB_XREF= gi:37989846
TID=Os.18927.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041M06, full insert sequence.
FL= gb:AK120223.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2545011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25400Os.52154.1.S1_at11/115+14692430..14695010RNase3 domain containing protein, expressed
LOC_Os05g25410OsAffx.4425.1.S1_at11/115+14699663..14700287hypothetical protein
LOC_Os05g25420OsAffx.14826.1.S1_at11/115+14702266..14704025hypothetical protein
LOC_Os05g25430Os.53753.1.S1_at11/115+14706608..14710993protein kinase family protein, putative, expressed
LOC_Os05g25440NANA5+14715765..14716001hypothetical protein
LOC_Os05g25450Os.18927.1.S1_at11/115+14717443..14721558protein kinase family protein, putative, expressed
LOC_Os05g25460OsAffx.27009.1.S1_at11/115+14722708..14723435hypothetical protein
LOC_Os05g25470Os.41695.15.S1_s_at11/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.3.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.5.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.2.S1_x_at9/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25480OsAffx.14827.1.S1_at11/115+14738266..14740584expressed protein
LOC_Os05g25490OsAffx.14625.1.S1_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25490OsAffx.14625.1.S1_x_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18927.1.S1_at--546--3491Chr05:14718004..14718028 (25 bp)
CAGGCCGTCCATGGGTGATGTGCTC
LOC_Os05g25450
Os.18927.1.S1_at--913--8571Chr05:14717891..14717915 (25 bp)
TGGTTGTGGCCAGGCTGCATTCAGA
LOC_Os05g25450
Os.18927.1.S1_at--420--9051Chr05:14717876..14717900 (25 bp)
TGCATTCAGATGAGCCGTCGACCGA
LOC_Os05g25450
Os.18927.1.S1_at--88--2531Chr05:14717827..14717851 (25 bp)
AACTTCTTTGAGCATCACTGACCGT
LOC_Os05g25450
Os.18927.1.S1_at--1016--371Chr05:14717814..14717838 (25 bp)
ATCACTGACCGTAGCATTGCGAGCG
LOC_Os05g25450
Os.18927.1.S1_at--768--3991Chr05:14717791..14717815 (25 bp)
CGTGGAGTCTGATGGGCTGACCCCA
LOC_Os05g25450
Os.18927.1.S1_at--831--3111Chr05:14717705..14717729 (25 bp)
AATATTGCTCCCTAGATTTGTGGTG
LOC_Os05g25450
Os.18927.1.S1_at--1154--8651Chr05:14717687..14717711 (25 bp)
TGTGGTGTGCCTCAACAGAATTCTT
LOC_Os05g25450
Os.18927.1.S1_at--1125--4311Chr05:14717618..14717642 (25 bp)
CCTTGCTATGCATCATTTTGGGCTA
LOC_Os05g25450
Os.18927.1.S1_at--138--10771Chr05:14717507..14717531 (25 bp)
TTGAGATTCTTACCTCCTAATGCAG
LOC_Os05g25450
Os.18927.1.S1_at--542--4351Chr05:14717445..14717469 (25 bp)
CCACTTATCCCTTTCTGAGTTTTGA
LOC_Os05g25450
Target Sequence 
CAGGCCGTCCATGGGTGATGTGCTCTGGAACCTCGAGTTTGCGCTCCAGCTGCAGGAGAGCACGGAGGACAGTAGCAGCC
TGACCGAGGGGACGTCAGCGAGCACGTCGCCGCTGGTTGTGGCCAGGCTGCATTCAGATGAGCCGTCGACCGACGTGACT
ANTACNACTACAACGACAACTTCTTTGAGCATCACTGACCGTAGCATTGCGAGCGTGGAGTCTGATGGGCTGACCCCAAG
CAACATCTTCTCCCAGCTCATGACACCAGATGGAAGATGANAATCAAATTGCAAGCTCTAATATTGCTCCCTAGATTTGT
GGTGTGCCTCAACAGAATTCTTGTCAGGAATAGCTAATTGTATAGTTATCTTACTTGCTCTACTANCCTTGCTATGCATC
ATTTTGGGCTAAATATATGTATGTTTTAGTTCTTTAGCAGATCTATGTTTCTTTCAAAATCGCAGTAATTGTATAGGTAC
CTCTAAATTGAAGGGGGTTGAGATTCTTACCTCCTAATGCAGTTGTAATCTTGTAATAAAAGAGCATGGAAGATATCNCC
CACTTATCCCTTTCTGAGTTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis