Browse Element(s) Details


OsAffx.27009.1.S1_at

Description tigr:9633.m02292
TID=OsAffx.27009.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2546011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25410OsAffx.4425.1.S1_at11/115+14699663..14700287hypothetical protein
LOC_Os05g25420OsAffx.14826.1.S1_at11/115+14702266..14704025hypothetical protein
LOC_Os05g25430Os.53753.1.S1_at11/115+14706608..14710993protein kinase family protein, putative, expressed
LOC_Os05g25440NANA5+14715765..14716001hypothetical protein
LOC_Os05g25450Os.18927.1.S1_at11/115+14717443..14721558protein kinase family protein, putative, expressed
LOC_Os05g25460OsAffx.27009.1.S1_at11/115+14722708..14723435hypothetical protein
LOC_Os05g25470Os.41695.15.S1_s_at11/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.3.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.5.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.2.S1_x_at9/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25480OsAffx.14827.1.S1_at11/115+14738266..14740584expressed protein
LOC_Os05g25490OsAffx.14625.1.S1_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25490OsAffx.14625.1.S1_x_at1/115+14743820..147463931-aminocyclopropane-1-carboxylate synthase 7, putative
LOC_Os05g25500OsAffx.4426.1.S1_at11/115+14747224..14747754hypothetical protein
LOC_Os05g25510OsAffx.4427.1.S1_at11/115+14748062..14748397hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27009.1.S1_at--691--8031Chr05:14722815..14722839 (25 bp)
GGAGTCGGCAACAGCAGGAGGTGCT
LOC_Os05g25460
OsAffx.27009.1.S1_at--78--3471Chr05:14722829..14722853 (25 bp)
CAGGAGGTGCTGTGACGGCCCGACA
LOC_Os05g25460
OsAffx.27009.1.S1_at--239--2151Chr05:14722887..14723279 (25 bp)
ACAGCAGAGGCGGCTAAGGATCTTG
LOC_Os05g25460
OsAffx.27009.1.S1_at--643--2911Chr05:14723271..14723294 (24 bp)
AAGGATCTTGATAAACATCTATGTT
LOC_Os05g25460
OsAffx.27009.1.S1_at--177--411Chr05:14723286..14723310 (25 bp)
ATCTATGTTAGGGTTTATGGTCCAT
LOC_Os05g25460
OsAffx.27009.1.S1_at--793--7871Chr05:14723297..14723321 (25 bp)
GGTTTATGGTCCATACTTTGGTGGG
LOC_Os05g25460
OsAffx.27009.1.S1_at--208--6051Chr05:14723332..14723356 (25 bp)
GAGATATCGCTAGGCTTAGAGGGAT
LOC_Os05g25460
OsAffx.27009.1.S1_at--746--531Chr05:14723337..14723361 (25 bp)
ATCGCTAGGCTTAGAGGGATGACCG
LOC_Os05g25460
OsAffx.27009.1.S1_at--294--5831Chr05:14723357..14723381 (25 bp)
GACCGTGAGAGATGACGGCTCGACA
LOC_Os05g25460
OsAffx.27009.1.S1_at--1023--1931Chr05:14723371..14723395 (25 bp)
ACGGCTCGACAGTGGATAGTGAACA
LOC_Os05g25460
OsAffx.27009.1.S1_at--741--9351Chr05:14723376..14723400 (25 bp)
TCGACAGTGGATAGTGAACATGAGC
LOC_Os05g25460
Target Sequence 
GGAGTCGGCAACAGCAGGAGGTGCTGTGACGGCCCGACAGCGGCCTCCCCACCCAGTGGTGGTGGCGGCCCGACAGCAGA
GGCGGCTAAGGATCTTGATAAACATCTATGTTAGGGTTTATGGTCCATACTTTGGTGGGGGTGGGAGGGGAGATATCGCT
AGGCTTAGAGGGATGACCGTGAGAGATGACGGCTCGACAGTGGATAGTGAACATGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis