Browse Element(s) Details


Os.53753.1.S1_at

Description gb:AK099713.1
DB_XREF= gi:32984922
TID=Os.53753.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013084B13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013084B13, full insert sequence.
FL= gb:AK099713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2543011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25400Os.52154.1.S1_at11/115+14692430..14695010RNase3 domain containing protein, expressed
LOC_Os05g25410OsAffx.4425.1.S1_at11/115+14699663..14700287hypothetical protein
LOC_Os05g25420OsAffx.14826.1.S1_at11/115+14702266..14704025hypothetical protein
LOC_Os05g25430Os.53753.1.S1_at11/115+14706608..14710993protein kinase family protein, putative, expressed
LOC_Os05g25440NANA5+14715765..14716001hypothetical protein
LOC_Os05g25450Os.18927.1.S1_at11/115+14717443..14721558protein kinase family protein, putative, expressed
LOC_Os05g25460OsAffx.27009.1.S1_at11/115+14722708..14723435hypothetical protein
LOC_Os05g25470Os.41695.15.S1_s_at11/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.3.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.5.S1_x_at10/115+14725162..14731262transposon protein, putative, Mutator sub-class
LOC_Os05g25470Os.41695.2.S1_x_at9/115+14725162..14731262transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53753.1.S1_at--130--2271Chr05:14707153..14707177 (25 bp)
AAATCACCCCACAGTGCTTCAGGAA
LOC_Os05g25430
Os.53753.1.S1_at--877--5451Chr05:14707086..14707110 (25 bp)
GAACAGGCCATCCATGGGTGATGTC
LOC_Os05g25430
Os.53753.1.S1_at--655--5431Chr05:14707056..14707080 (25 bp)
GAACCTCGAGGTTGCACTACAGCTG
LOC_Os05g25430
Os.53753.1.S1_at--149--4951Chr05:14706998..14707022 (25 bp)
GCATTGAACGTGTTATCATCGCCTT
LOC_Os05g25430
Os.53753.1.S1_at--34--411Chr05:14706984..14707008 (25 bp)
ATCATCGCCTTTAACGACCAGGTTG
LOC_Os05g25430
Os.53753.1.S1_at--925--2431Chr05:14706922..14706946 (25 bp)
AAAAGGCTGTCTTCTCAGAGATGAT
LOC_Os05g25430
Os.53753.1.S1_at--6--1211Chr05:14706862..14706886 (25 bp)
AGTATTCTTCTCAAGCTTCTGTTCT
LOC_Os05g25430
Os.53753.1.S1_at--374--2571Chr05:14706786..14706810 (25 bp)
AACGGACTGTCCTGTGAGATACTGA
LOC_Os05g25430
Os.53753.1.S1_at--585--6531Chr05:14706754..14706778 (25 bp)
GATTAATCTGTGTGTCCCACGTACA
LOC_Os05g25430
Os.53753.1.S1_at--993--6791Chr05:14706724..14706748 (25 bp)
GTTTACCTTCCTTACAATCCAGAGA
LOC_Os05g25430
Os.53753.1.S1_at--156--4071Chr05:14706647..14706671 (25 bp)
CGAGGACGCCATTTGTATGCATGAT
LOC_Os05g25430
Target Sequence 
AAATCACCCCACAGTGCTTCAGGAAATTCACAGAGACTGCAGAGCAGTGTGTTGCTGATTACAGCATGAACAGGCCATCC
ATGGGTGATGTCCTGTGGAACCTCGAGGTTGCACTACAGCTGCAGGAGAGTGCAGAGGAAAACTGCGAAGAGACAGCATT
GAACGTGTTATCATCGCCTTTAACGACCAGGTTGCAACCATCATCCCGCTCAACTATGAGCATCTCTGGACAAAAGGCTG
TCTTCTCAGAGATGATGCATCCAGATGGCCGATAAGACCAAACTACCGTTTAGTATTCTTCTCAAGCTTCTGTTCTCATG
TTTTATAGGGAAAATTGTTGGAGTTTATAACAGTTAATTTGATTGTTAACGGACTGTCCTGTGAGATACTGAACCAGTTG
ATTAATCTGTGTGTCCCACGTACACTCTTGTTTACCTTCCTTACAATCCAGAGACTGGAATAATCTTCTGTAGTACACGG
ACTAATTAGTAACTACTGTACTACAACGAGGACGCCATTTGTATGCATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis