Browse Element(s) Details


Os.52154.1.S1_at

Description gb:AK065362.1
DB_XREF= gi:32975380
TID=Os.52154.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013006O19, full insert sequence.
FL= gb:AK065362.1 gb:AK105787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2540011/11RNase3 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25390Os.27100.1.A1_at11/115+14671681..14675983Protein kinase domain containing protein, expressed
LOC_Os05g25390Os.20038.1.S1_at9/115+14671681..14675983Protein kinase domain containing protein, expressed
LOC_Os05g25400Os.52154.1.S1_at11/115+14692430..14695010RNase3 domain containing protein, expressed
LOC_Os05g25410OsAffx.4425.1.S1_at11/115+14699663..14700287hypothetical protein
LOC_Os05g25420OsAffx.14826.1.S1_at11/115+14702266..14704025hypothetical protein
LOC_Os05g25430Os.53753.1.S1_at11/115+14706608..14710993protein kinase family protein, putative, expressed
LOC_Os05g25440NANA5+14715765..14716001hypothetical protein
LOC_Os05g25450Os.18927.1.S1_at11/115+14717443..14721558protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52154.1.S1_at--281--2752Chr05:14694432..14694456 (25 bp)
AAGAACTCCACTTCTGTACAATCTC
LOC_Os05g25400
Os.52154.1.S1_at--174--10031Chr05:14694601..14694625 (25 bp)
TAGCAATTACCGTTTGTCTGTCAAA
LOC_Os05g25400
Os.52154.1.S1_at--820--2971Chr05:14694683..14694707 (25 bp)
AATGGTGTCACTTCCAGGAGGGTGT
LOC_Os05g25400
Os.52154.1.S1_at--1045--7531Chr05:14694706..14694730 (25 bp)
GTGGCGGTTCTGATCTGTAGATTCT
LOC_Os05g25400
Os.52154.1.S1_at--981--6931Chr05:14694722..14694746 (25 bp)
GTAGATTCTGAGGTGGCAAGCCGTT
LOC_Os05g25400
Os.52154.1.S1_at--580--5151Chr05:14694737..14694761 (25 bp)
GCAAGCCGTTGTGTTATTACTACTC
LOC_Os05g25400
Os.52154.1.S1_at--1021--7191Chr05:14694777..14694801 (25 bp)
GTCGTGGTATCTTTGACACCTTGTG
LOC_Os05g25400
Os.52154.1.S1_at--87--5051Chr05:14694846..14694870 (25 bp)
GCAGAGTTTTAGCACGACTTCAGAA
LOC_Os05g25400
Os.52154.1.S1_at--266--9811Chr05:14694872..14694896 (25 bp)
TAACCTGTTCTATGTGCTTCATGGA
LOC_Os05g25400
Os.52154.1.S1_at--659--7931Chr05:14694894..14694918 (25 bp)
GGATTCAGTGCACTACCATTATGAG
LOC_Os05g25400
Os.52154.1.S1_at--191--5991Chr05:14694916..14694940 (25 bp)
GAGACAGATGCCTTTGCTTTGCTGT
LOC_Os05g25400
Target Sequence 
AAGAACTCCACTTCTGTACAATCTCAGCAACAAGCAGCGCAGTGAATAGTTTCTGTATTGCAGCAAACATGGTATGATCT
AAACAATAGTTATCTGGTGACNACAACCAGCACAAAAATTCATTTAGTTTTGGTGTATGACATCCAAAAGTGGTTGCTCA
ATGAATGAATAGCAATTACCGTTTGTCTGTCAAACAAGTATCGAGTGAATTGAGCAATGTACATGTATGCAAATATCATT
CAGTGCAAGAAAATGGTGTCACTTCCAGGAGGGTGTGGCGGTTCTGATCTGTAGATTCTGAGGTGGCAAGCCGTTGTGTT
ATTACTACTCATTAGGTTGATATAGGTCGTGGTATCTTTGACACCTTGTGTATGAAGGAGCTGCGAAACTGCAAGATATG
CTGAATGATTTGATGCAGAGTTTTAGCACGACTTCAGAATTAACCTGTTCTATGTGCTTCATGGATTCAGTGCACTACCA
TTATGAGACAGATGCCTTTGCTTTGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis