Browse Element(s) Details


Os.20038.1.S1_at

Description gb:BI812001
DB_XREF= gi:16577906
DB_XREF=C003C10
CLONE=C003C10
TID=Os.20038.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.20038 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g253909/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25370Os.52264.1.S1_at11/115+14647842..14657746Protein kinase domain containing protein, expressed
LOC_Os05g25370OsAffx.8445.1.S1_at2/115+14647842..14657746Protein kinase domain containing protein, expressed
LOC_Os05g25380NANA5+14664034..14665794Zinc knuckle family protein
LOC_Os05g25390Os.27100.1.A1_at11/115+14671681..14675983Protein kinase domain containing protein, expressed
LOC_Os05g25390Os.20038.1.S1_at9/115+14671681..14675983Protein kinase domain containing protein, expressed
LOC_Os05g25400Os.52154.1.S1_at11/115+14692430..14695010RNase3 domain containing protein, expressed
LOC_Os05g25410OsAffx.4425.1.S1_at11/115+14699663..14700287hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20038.1.S1_at--1029--391Chr05:14673427..14673451 (25 bp)
ATCAGTATCATGCTGGGTCCCATAC
LOC_Os05g25390
Os.20038.1.S1_at--789--2111NONE
ACATGGTCAACTTGCGCGGCTTACA
NONE
Os.20038.1.S1_at--223--10691Chr05:14673473..14673498 (25 bp)
TTGCGCGGCTTACATCCGGAGAAAA
LOC_Os05g25390
Os.20038.1.S1_at--169--5531Chr05:14673494..14673518 (25 bp)
GAAAAGCATTGACCATACCAGAGCA
LOC_Os05g25390
Os.20038.1.S1_at--72--7451NONE
GTGTAAATCTACCTAACTCCATCCA
NONE
Os.20038.1.S1_at--809--9231Chr05:14673537..14673561 (25 bp)
TCCATCCAGAGAGCTAGCATTGTCA
LOC_Os05g25390
Os.20038.1.S1_at--1151--9311Chr05:14673559..14673583 (25 bp)
TCAGCTTTACAACACGGACGAACCA
LOC_Os05g25390
Os.20038.1.S1_at--1018--212Chr05:14673604..14673628 (25 bp)
ATTTGGAATGAGTTGCTGCACGATT
LOC_Os05g25390
Os.20038.1.S1_at--558--5091Chr05:14673621..14673645 (25 bp)
GCACGATTTAGCTCGCTTTGGAGTT
LOC_Os05g25390
Os.20038.1.S1_at--108--1211Chr05:14673642..14673666 (25 bp)
AGTTTGTACGAATTCTCCACGCGAA
LOC_Os05g25390
Os.20038.1.S1_at--1080--3171Chr05:14673668..14673692 (25 bp)
CAATTTAACTCCTTCGTGGAGCCCA
LOC_Os05g25390
Target Sequence 
ATCAGTATCATGCTGGGTCCCATACTCCCTTGCGCCACATGGTCAACTTGCGCGGCTTACATCCGGAGAAAAGCATTGAC
CATACCAGAGCAAGTGTAAATCTACCTAACTCCATCCAGAGAGCTAGCATTGTCAGCTTTACAACACGGACGAACCACAG
GAAGTTCAACGGTTGGAAATTTGGAATGAGTTGCTGCACGATTTAGCTCGCTTTGGAGTTTGTACGAATTCTCCACGCGA
AACAATTTAACTCCTTCGTGGAGCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis