Browse Element(s) Details


OsAffx.8445.1.S1_at

Description gb:NM_195097.1
DB_XREF= gi:37531553
TID=OsAffx.8445.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase (OSJNBa0061H20.17), mRNA.
PROD=putative S-adenosyl-L-methionine:salicylic acidcarboxyl methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g093608/11Jasmonate O-methyltransferase, putative
LOC_Os05g253702/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09310NANA10+4798368..4802291retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09320NANA10+4806686..4807186transposon protein, putative, unclassified
LOC_Os10g09330NANA10+4809446..4810262hypothetical protein
LOC_Os10g09340OsAffx.6614.1.S1_at11/1110+4810687..4811333hypothetical protein
LOC_Os10g09350Os.46012.2.S1_x_at10/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09350Os.46012.3.S1_x_at7/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09350Os.27088.1.A1_x_at7/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09360OsAffx.8445.1.S1_at8/1110+4821396..4821809Jasmonate O-methyltransferase, putative
LOC_Os10g09370OsAffx.8444.1.S1_at11/1110+4824337..4826010retrotransposon protein, putative, unclassified
LOC_Os10g09380NANA10+4826562..4829184retrotransposon protein, putative, unclassified
LOC_Os10g09390NANA10+4829530..4830924hypothetical protein
LOC_Os10g09400NANA10+4834172..4840889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09410NANA10+4844029..4845102retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009694biological_processjasmonic acid metabolism
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0005737cellular_componentcytoplasm
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
GO:0016301molecular_functionkinase activity
GO:0030795molecular_functionjasmonate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8445.1.S1_at--763--5771Chr10:4821605..4821629 (25 bp)
GACGAGCTCACCGTGTTATTGAACG
LOC_Os10g09360
OsAffx.8445.1.S1_at--1111--8731Chr10:4821592..4821616 (25 bp)
TGTTATTGAACGACCTCCCGACGAA
LOC_Os10g09360
OsAffx.8445.1.S1_at--491--5791Chr10:4821573..4821597 (25 bp)
GACGAACGACTTCACCAGCGCGATG
LOC_Os10g09360
OsAffx.8445.1.S1_at--122--3391Chr10:4821558..4821582 (25 bp)
CAGCGCGATGACTGGCCTGCCGTTG
LOC_Os10g09360
OsAffx.8445.1.S1_at--898--7131Chr10:4821482..4821506 (25 bp)
GTCTTCGTGTCCGTCGTGCCAGGGA
LOC_Os10g09360
OsAffx.8445.1.S1_at--505--9151Chr10:4821466..4821490 (25 bp)
TGCCAGGGACGTTCTACGGTAGGCT
LOC_Os10g09360
OsAffx.8445.1.S1_at--603--6911Chr10:4821448..4821472 (25 bp)
GTAGGCTGTTCCCTGAACGAACGAT
LOC_Os10g09360
OsAffx.8445.1.S1_at--495--5451Chr10:4821434..4821458 (25 bp)
GAACGAACGATGCATCTCGTCTGCT
LOC_Os10g09360
OsAffx.8445.1.S1_at--96--60914Chr08:3938143..3938174 (25 bp)
GAGTACGAGGCATCTGCGAGATCGA
NONE
OsAffx.8445.1.S1_at--864--61710Chr05:23363975..23363999 (25 bp)
GAGGAGACGGGCAGCCTTATCTCTT
NONE
OsAffx.8445.1.S1_at--327--3331Chr10:4820325..4820349 (25 bp)
CACTAACATTATCTCTTCATCCCAT
NONE
Target Sequence 
GACGAGCTCACCGTGTTATTGAACGACCTCCCGACGAACGACTTCACCAGCGCGATGACTGGCCTGCCGTTGCTCCGGCA
GAAGCACTCCGTCGTCGGCAGCGGCGTCGACTATTGGCCCGGCGTCTTCGTGTCCGTCGTGCCAGGGACGTTCTACGGTA
GGCTGTTCCCTGAACGAACGATGCATCTCGTCTGCTCTTCTTTCAGCCTGCACTGGCTCTCCAAGNNNNGNTNNGTAACA
CCAACCGGGACTAAAGATCTATCTTTAGTCCCGGTTGGTATCGTGGCGGAGAGTACGAGGCATCTGCGAGATCGAGGAGG
AGGAGACGGGCAGCCTTATCTCTTCACCTCTTCCTCCACTAACATTATCTCTTCATCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis