Browse Element(s) Details


OsAffx.6614.1.S1_at

Description tigr:9638.m00807
TID=OsAffx.6614.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0934011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09280Os.46314.3.S1_at11/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.7362.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.25367.1.S1_at1/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09290Os.40325.1.A1_at9/1110+4790787..4793391expressed protein
LOC_Os10g09290Os.49334.2.S1_at1/1110+4790787..4793391expressed protein
LOC_Os10g09300OsAffx.26189.1.A1_s_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09300Os.29747.1.S1_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09310NANA10+4798368..4802291retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09320NANA10+4806686..4807186transposon protein, putative, unclassified
LOC_Os10g09330NANA10+4809446..4810262hypothetical protein
LOC_Os10g09340OsAffx.6614.1.S1_at11/1110+4810687..4811333hypothetical protein
LOC_Os10g09350Os.46012.2.S1_x_at10/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09350Os.46012.3.S1_x_at7/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09350Os.27088.1.A1_x_at7/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09360OsAffx.8445.1.S1_at8/1110+4821396..4821809Jasmonate O-methyltransferase, putative
LOC_Os10g09370OsAffx.8444.1.S1_at11/1110+4824337..4826010retrotransposon protein, putative, unclassified
LOC_Os10g09380NANA10+4826562..4829184retrotransposon protein, putative, unclassified
LOC_Os10g09390NANA10+4829530..4830924hypothetical protein
LOC_Os10g09400NANA10+4834172..4840889retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6614.1.S1_at--741--1751Chr10:4811272..4811292 (21 bp)
ACCTCAGAAGCGGAGACACACAGGA
LOC_Os10g09340
OsAffx.6614.1.S1_at--353--4071Chr10:4810917..4810941 (25 bp)
CGAGGGCTCCTTCGAGATTGTGTAT
LOC_Os10g09340
OsAffx.6614.1.S1_at--248--4071Chr10:4810905..4810929 (25 bp)
CGAGATTGTGTATCGGGAGCTCTTC
LOC_Os10g09340
OsAffx.6614.1.S1_at--723--6891Chr10:4810896..4810920 (25 bp)
GTATCGGGAGCTCTTCGTGACCATG
LOC_Os10g09340
OsAffx.6614.1.S1_at--187--9571Chr10:4810885..4810909 (25 bp)
TCTTCGTGACCATGCCGGGCAGCAG
LOC_Os10g09340
OsAffx.6614.1.S1_at--1002--1571Chr10:4810854..4810878 (25 bp)
AGCTCCTCCCAGTCAAAGAACAAGG
LOC_Os10g09340
OsAffx.6614.1.S1_at--818--4611Chr10:4810818..4810842 (25 bp)
GCGAGAGCATTGTGCGCGCCACACG
LOC_Os10g09340
OsAffx.6614.1.S1_at--1048--8691Chr10:4810808..4810832 (25 bp)
TGTGCGCGCCACACGAGGATGTATT
LOC_Os10g09340
OsAffx.6614.1.S1_at--974--7991Chr10:4810792..4810816 (25 bp)
GGATGTATTGGCTAGGCACTTTGGA
LOC_Os10g09340
OsAffx.6614.1.S1_at--1130--8891Chr10:4810757..4810781 (25 bp)
TGAGCGATTTTGTGAAGACGGCGCA
LOC_Os10g09340
OsAffx.6614.1.S1_at--796--4891Chr10:4810718..4810742 (25 bp)
GCTTAGATGAGCACGACAACTTCAA
LOC_Os10g09340
Target Sequence 
ACCTCAGAAGCGGAGACACACAGGAGGTGGTGGAGGCAGTCAGCGCCGAGGGCTCCTTCGAGATTGTGTATCGGGAGCTC
TTCGTGACCATGCCGGGCAGCAGCGCAGCAGCTCCTCCCAGTCAAAGAACAAGGCGGCGTTCGCGGCGAGAGCATTGTGC
GCGCCACACGAGGATGTATTGGCTAGGCACTTTGGAGGCGGCGTGGTGAGCGATTTTGTGAAGACGGCGCAGGAGCACAT
CGACAGCTTAGATGAGCACGACAACTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis