Browse Element(s) Details


Os.40325.1.A1_at

Description gb:CF335662
DB_XREF= gi:33819687
DB_XREF=JMT--05-G20.g1
CLONE=JMT--05-G20
TID=Os.40325.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40325 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g092909/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09250NANA10+4765503..4767693retrotransposon, putative, centromere-specific
LOC_Os10g09260OsAffx.25377.1.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.2.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.1.S1_at8/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.3.S1_s_at4/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.4.S1_x_at2/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.3.S1_x_at1/1110+4771647..4772183hypothetical protein
LOC_Os10g09270OsAffx.6613.1.S1_at8/1110+4776471..4779892hypothetical protein
LOC_Os10g09280Os.46314.3.S1_at11/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.7362.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.25367.1.S1_at1/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09290Os.40325.1.A1_at9/1110+4790787..4793391expressed protein
LOC_Os10g09290Os.49334.2.S1_at1/1110+4790787..4793391expressed protein
LOC_Os10g09300OsAffx.26189.1.A1_s_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09300Os.29747.1.S1_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09310NANA10+4798368..4802291retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09320NANA10+4806686..4807186transposon protein, putative, unclassified
LOC_Os10g09330NANA10+4809446..4810262hypothetical protein
LOC_Os10g09340OsAffx.6614.1.S1_at11/1110+4810687..4811333hypothetical protein
LOC_Os10g09350Os.46012.2.S1_x_at10/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09350Os.46012.3.S1_x_at7/1110+4812352..4818440retrotransposon protein, putative, unclassified
LOC_Os10g09350Os.27088.1.A1_x_at7/1110+4812352..4818440retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40325.1.A1_at--880--5032Chr10:4791658..4791682 (25 bp)
GCAGATATTTAGTCTATGTGACCAT
LOC_Os10g09290
Os.40325.1.A1_at--429--5692Chr10:4791470..4791624 (25 bp)
GACTTTCAGAAATATTCCACATGTA
LOC_Os10g09290
Os.40325.1.A1_at--166--2531Chr10:4791403..4791427 (25 bp)
AACTAGGTTGACATACATCTACACT
LOC_Os10g09290
Os.40325.1.A1_at--493--331Chr10:4791391..4791415 (25 bp)
ATACATCTACACTCAAATTGGCGGT
LOC_Os10g09290
Os.40325.1.A1_at--566--132Chr10:4791358..4791382 (25 bp)
ATTAAGGTGCTGATCAGTGGTCGTA
LOC_Os10g09290
Os.40325.1.A1_at--90--5032Chr10:4791305..4791329 (25 bp)
GCAGTGTATAGTAACTTCGCTCCAG
LOC_Os10g09290
Os.40325.1.A1_at--1002--2512Chr10:4791293..4791317 (25 bp)
AACTTCGCTCCAGTATGTTTATGTG
LOC_Os10g09290
Os.40325.1.A1_at--515--4292Chr10:4791089..4791113 (25 bp)
CCTTCACGATAGAGGCCAGTTCTAC
LOC_Os10g09290
Os.40325.1.A1_at--817--8412Chr10:4791079..4791100 (22 bp)
GGCCAGTTCTACATTTCTGAGGACA
LOC_Os10g09290
Os.40325.1.A1_at--861--6832Chr10:4790697..4790721 (25 bp)
GTTTCTACTTGCTAAGTTATACCTG
NONE
Os.40325.1.A1_at--955--692Chr10:4790671..4790695 (25 bp)
ATGAGCAGAACATTTTGCAGCATGT
NONE
Target Sequence 
GCAGATATTTAGTCTATGTGACCATGACAGGGAAGCACACAGTGATGTGGAGCTTAATGACTTTCAGAAATATTCCACAT
GTAAGATAAGCATGGACAATATATAAGTACGGATCAATTTGGGAAAACTAGGTTGACATACATCTACACTCAAATTGGCG
GTATTCCAAGATTAAGGTGCTGATCAGTGGTCGTATCATGGGATTGAGATACATGTAGTTGTTGCAGTGTATAGTAACTT
CGCTCCAGTATGTTTATGTGGTAAATGGGGAGGCTGCGGAAGCCTTCACGATAGAGGCCAGTTCTACATTTCTGAGGACA
AGATGGAAGTGGAGCTGCAGGGATGCCATGCACTTCAATGATGTTGCGGCTTGCTGCTTGCTTGCAATTGTTCTGGAAAT
AATCTGATAAGTAATGTGAACTAATTGTTTCTACTTGCTAAGTTATACCTGAATGAGCAGAACATTTTGCAGCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40325.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis