Browse Element(s) Details


OsAffx.25377.1.S1_x_at

Description gb:NM_195093.1
DB_XREF= gi:37531545
TID=OsAffx.25377.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0061H20.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g092609/11hypothetical protein
LOC_Os03g302102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09220NANA10+4745977..4752638retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09229NANA10+4757686..4758017NA
LOC_Os10g09240Os.46791.1.S1_at11/1110+4760573..4761233expressed protein
LOC_Os10g09250NANA10+4765503..4767693retrotransposon, putative, centromere-specific
LOC_Os10g09260OsAffx.25377.1.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.2.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.1.S1_at8/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.3.S1_s_at4/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.4.S1_x_at2/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.3.S1_x_at1/1110+4771647..4772183hypothetical protein
LOC_Os10g09270OsAffx.6613.1.S1_at8/1110+4776471..4779892hypothetical protein
LOC_Os10g09280Os.46314.3.S1_at11/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.7362.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.25367.1.S1_at1/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09290Os.40325.1.A1_at9/1110+4790787..4793391expressed protein
LOC_Os10g09290Os.49334.2.S1_at1/1110+4790787..4793391expressed protein
LOC_Os10g09300OsAffx.26189.1.A1_s_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09300Os.29747.1.S1_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25377.1.S1_x_at--91--4191Chr10:4771957..4771981 (25 bp)
CCCTAGCCGGAGTTGTGAAGGACTC
LOC_Os10g09260
OsAffx.25377.1.S1_x_at--297--5312Chr03:19337184..19337498 (25 bp)
GAAGGACTCGGAGAACGCATCCTTT
NONE
OsAffx.25377.1.S1_x_at--118--8071Chr10:4771932..4771956 (25 bp)
GGAGAACGCATCCTTTGCTTCCCGG
LOC_Os10g09260
OsAffx.25377.1.S1_x_at--434--471Chr10:4771825..4771849 (25 bp)
ATCTCCATAACCTCACGAACATCTT
LOC_Os10g09260
OsAffx.25377.1.S1_x_at--596--351Chr10:4771819..4771843 (25 bp)
ATAACCTCACGAACATCTTGGACAT
LOC_Os10g09260
OsAffx.25377.1.S1_x_at--662--1851Chr10:4771811..4771835 (25 bp)
ACGAACATCTTGGACATGCATGCAT
LOC_Os10g09260
OsAffx.25377.1.S1_x_at--201--2113Chr04:5583053..5583072 (20 bp)
ACATGCATGCATGGCAGGTCCTTGA
NONE
OsAffx.25377.1.S1_x_at--407--852Chr10:4771788..4771812 (25 bp)
ATGGCAGGTCCTTGAGTTGTTCGAG
LOC_Os10g09260
OsAffx.25377.1.S1_x_at--604--1032Chr10:4771783..4771807 (25 bp)
AGGTCCTTGAGTTGTTCGAGCCGTC
LOC_Os10g09260
OsAffx.25377.1.S1_x_at--1078--9576Chr06:14715449..14715549 (25 bp)
TCTTCCTACAGCTTGTAACAGCTCA
NONE
OsAffx.25377.1.S1_x_at--1043--4296Chr06:14715453..14715553 (25 bp)
CCTACAGCTTGTAACAGCTCATGTA
NONE
Target Sequence 
CCCTAGCCGGAGTTGTGAAGGACTCGGAGAACGCATCCTTTGCTTCCCGGCGCCGATCTAGGATCGCCTCCGCCATCATC
GTCGATTACCGCTGCCTCGGTGAGCCATTGTTCGATTCCTCGCGTATACACCATCTCCATAACCTCACGAACATCTTGGA
CATGCATGCATGGCAGGTCCTTGAGTTGTTCGAGCCGTCGCCGTTCCCCCGAGGAGGAGCGCTGCCGTCGAACCGTTCCA
ACCAAAGCCGCTGCTATCCAAGCTTCGGCGATTTCTTCCTACAGCTTGTAACAGCTCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25377.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis