Browse Element(s) Details


Os.46791.1.S1_at

Description gb:AK111271.1
DB_XREF= gi:32996480
TID=Os.46791.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0061H20.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-F12, full insert sequence.
FL= gb:AK111271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0924011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09200OsAffx.18185.1.S1_s_at11/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.38368.1.S1_s_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.10847.1.A1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_x_at9/1110+4732595..4736069hypothetical protein
LOC_Os10g09210NANA10+4743050..4743730transposon protein, putative, unclassified
LOC_Os10g09220NANA10+4745977..4752638retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09229NANA10+4757686..4758017NA
LOC_Os10g09240Os.46791.1.S1_at11/1110+4760573..4761233expressed protein
LOC_Os10g09250NANA10+4765503..4767693retrotransposon, putative, centromere-specific
LOC_Os10g09260OsAffx.25377.1.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.2.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.1.S1_at8/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.3.S1_s_at4/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.4.S1_x_at2/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.3.S1_x_at1/1110+4771647..4772183hypothetical protein
LOC_Os10g09270OsAffx.6613.1.S1_at8/1110+4776471..4779892hypothetical protein
LOC_Os10g09280Os.46314.3.S1_at11/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.7362.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.25367.1.S1_at1/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46791.1.S1_at--1085--10551Chr10:4761091..4761115 (25 bp)
TTCTTCCTCTACCTGACGTGGCAGA
LOC_Os10g09240
Os.46791.1.S1_at--81--851Chr10:4761067..4761091 (25 bp)
ATGGACGAGTACGAGGAGCAGCTAC
LOC_Os10g09240
Os.46791.1.S1_at--920--8491Chr10:4760994..4761018 (25 bp)
TGGCACTGGTCCTGCTCGGGAGCCA
LOC_Os10g09240
Os.46791.1.S1_at--688--8791Chr10:4760832..4760856 (25 bp)
TGTTGGCGTCGCACAAGCCGTCGTT
LOC_Os10g09240
Os.46791.1.S1_at--591--2211Chr10:4760820..4760844 (25 bp)
ACAAGCCGTCGTTCCAGATGTTCCG
LOC_Os10g09240
Os.46791.1.S1_at--685--8411Chr10:4760796..4760820 (25 bp)
GGCCGCCGTGGCACTACAAGTAGCT
LOC_Os10g09240
Os.46791.1.S1_at--621--9851Chr10:4760782..4760806 (25 bp)
TACAAGTAGCTGCTTCGCTTCACTT
LOC_Os10g09240
Os.46791.1.S1_at--61--4031Chr10:4760730..4760754 (25 bp)
CGTCACTCCTTTTCAATTTTCTGTA
LOC_Os10g09240
Os.46791.1.S1_at--615--5291Chr10:4760676..4760700 (25 bp)
GAAGGCTACCACATAATTAAGAGAA
LOC_Os10g09240
Os.46791.1.S1_at--411--2791Chr10:4760637..4760661 (25 bp)
AAGAGTTCATCTTATTTTGCGTACG
LOC_Os10g09240
Os.46791.1.S1_at--867--4631Chr10:4760619..4760643 (25 bp)
GCGTACGTATTTGTAGCATCTAGAA
LOC_Os10g09240
Target Sequence 
TTCTTCCTCTACCTGACGTGGCAGATGGACGAGTACGAGGAGCAGCTACGGCGGCGCACGCAGGCCGGGCTGTGGGTGCT
GCTGGTGCTCGGGGCGGTGGCACTGGTCCTGCTCGGGAGCCACGCGCTGGTGGACGCCGGAGGGAGGGTCGCCGTGCCGG
TGTCGTGGCGGTGGGGCGGCGGCTACGGTGGTAGTAGCGGGGACGACGGCGGCGGCGCGTCGCCGTGGGCCGTCGCGGCG
GTGGTGGCGGTGCTGCTGGTGTTGGCGTCGCACAAGCCGTCGTTCCAGATGTTCCGGCCGCCGTGGCACTACAAGTAGCT
GCTTCGCTTCACTTCCTCACCCTCCCCGGCTGGCTTACCCTCGTCACTCCTTTTCAATTTTCTGTACAGAAAAGGATTTA
GTTTTCTTTTTTTGAGAAGGCTACCACATAATTAAGAGAATACACGTGTAATAGAAGAGTTCATCTTATTTTGCGTACGT
ATTTGTAGCATCTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46791.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis