Browse Element(s) Details


Os.38368.1.S1_s_at

Description gb:AK103811.1
DB_XREF= gi:32989020
TID=Os.38368.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033147B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147B10, full insert sequence.
FL= gb:AK103811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0920010/11hypothetical protein
LOC_Os10g206002/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g259201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09140NANA10+4706608..4707878hypothetical protein
LOC_Os10g09150OsAffx.30353.2.S1_at11/1110+4711823..4712486hypothetical protein
LOC_Os10g09160OsAffx.20701.2.S1_x_at11/1110+4713009..4714478Cytochrome P450 family protein, expressed
LOC_Os10g09170OsAffx.30354.1.S1_at11/1110+4718106..4721329hypothetical protein
LOC_Os10g09180NANA10+4723294..4725385hypothetical protein
LOC_Os10g09190OsAffx.30355.1.S1_at11/1110+4727843..4728202hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_s_at11/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.38368.1.S1_s_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.10847.1.A1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_x_at9/1110+4732595..4736069hypothetical protein
LOC_Os10g09210NANA10+4743050..4743730transposon protein, putative, unclassified
LOC_Os10g09220NANA10+4745977..4752638retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09229NANA10+4757686..4758017NA
LOC_Os10g09240Os.46791.1.S1_at11/1110+4760573..4761233expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38368.1.S1_s_at--744--371Chr10:4733179..4733203 (25 bp)
ATCAACCTCCACCTGGGATTCTAGA
LOC_Os10g09200
Os.38368.1.S1_s_at--170--9231Chr10:4733186..4733210 (25 bp)
TCCACCTGGGATTCTAGATTTCAAG
LOC_Os10g09200
Os.38368.1.S1_s_at--672--7931Chr10:4733194..4733218 (25 bp)
GGATTCTAGATTTCAAGGAAGCAGA
LOC_Os10g09200
Os.38368.1.S1_s_at--1068--6251Chr10:4733318..4733342 (25 bp)
GATGGGCACCTGGTTGTTCTTGTTC
LOC_Os10g09200
Os.38368.1.S1_s_at--176--3912Chr10:4733327..4733351 (25 bp)
CTGGTTGTTCTTGTTCTTTTCTGAT
LOC_Os10g09200
Os.38368.1.S1_s_at--798--10172Chr10:10052098..10052122 (25 bp)
TATTGCTTCGTGCACAAGGTTCCTG
LOC_Os10g20600
Os.38368.1.S1_s_at--46--4111Chr10:4734420..4734444 (25 bp)
CGAATGCATCCGCTTCCCGGAGCAT
LOC_Os10g09200
Os.38368.1.S1_s_at--711--4912Chr10:10052141..10052165 (25 bp)
GCTTCCCGGAGCATCAGTTATGCGT
LOC_Os10g20600
Os.38368.1.S1_s_at--348--3451NONE
CAGTTATGCGTGGTTGGCACTTTTA
NONE
Os.38368.1.S1_s_at--178--8251Chr10:4735231..4735255 (25 bp)
GGCACTTTTAGTGGCCAGAGTATTT
LOC_Os10g09200
Os.38368.1.S1_s_at--424--5012Chr10:4735279..4735303 (25 bp)
GCAGGATTTTTTGGCACTAGTTGCT
LOC_Os10g09200
Target Sequence 
ATCAACCTCCACCTGGGATTCTAGATTTCAAGGAAGCAGAAATGGGGGCAAAGGGGATGGGCACCTGGTTGTTCTTGTTC
TTTTCTGATGGGGCAGATGGGATGGAGACTTGTGGGTGGAGCCGTGGAGGCGACAAGGGTTTATTGCTTCGTGCACAAGG
TTCCTGTCTGCGGCGAATGCATCCGCTTCCCGGAGCATCAGTTATGCGTGGTTGGCACTTTTAGTGGCCAGAGTATTTTT
TTTTTGCGTTGGTTGCTGGAACGCAGGATTTTTTGGCACTAGTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38368.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis