Browse Element(s) Details


OsAffx.20701.2.S1_x_at

Description tigr:9638.m00789
TID=OsAffx.20701.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0916011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09110Os.46470.2.S1_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09110Os.46470.2.S1_x_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09110Os.46470.1.S1_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09130OsAffx.30352.1.S1_at11/1110+4703327..4705074hypothetical protein
LOC_Os10g09130Os.39421.1.S1_at3/1110+4703327..4705074hypothetical protein
LOC_Os10g09130OsAffx.20967.1.S1_x_at1/1110+4703327..4705074hypothetical protein
LOC_Os10g09140NANA10+4706608..4707878hypothetical protein
LOC_Os10g09150OsAffx.30353.2.S1_at11/1110+4711823..4712486hypothetical protein
LOC_Os10g09160OsAffx.20701.2.S1_x_at11/1110+4713009..4714478Cytochrome P450 family protein, expressed
LOC_Os10g09170OsAffx.30354.1.S1_at11/1110+4718106..4721329hypothetical protein
LOC_Os10g09180NANA10+4723294..4725385hypothetical protein
LOC_Os10g09190OsAffx.30355.1.S1_at11/1110+4727843..4728202hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_s_at11/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.38368.1.S1_s_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.10847.1.A1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_x_at9/1110+4732595..4736069hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20701.2.S1_x_at--745--9211Chr10:4713932..4713956 (25 bp)
TCCAACAGTGATGTCCAAGGCGCAA
LOC_Os10g09160
OsAffx.20701.2.S1_x_at--962--5931Chr10:4714044..4714068 (25 bp)
GAGACTGTACGGTTACATACCCCGG
LOC_Os10g09160
OsAffx.20701.2.S1_x_at--903--8431Chr10:4714069..4714093 (25 bp)
GGCCACTTTTCATGAGGGAGTGCCA
LOC_Os10g09160
OsAffx.20701.2.S1_x_at--1095--2851Chr10:4714105..4714129 (25 bp)
AAGTGATGGGCTATGACGTGCCAAA
LOC_Os10g09160
OsAffx.20701.2.S1_x_at--586--2011Chr10:4714145..4714169 (25 bp)
ACTAAATCTGTGGTCGATCTCAAGA
LOC_Os10g09160
OsAffx.20701.2.S1_x_at--21--131Chr10:4714256..4714280 (25 bp)
ATTCATTCCATTTGGTGCTGGGAGA
LOC_Os10g09160
OsAffx.20701.2.S1_x_at--516--3891Chr10:4714291..4714315 (25 bp)
CTGGTATGTTGTTTGGGCTCGCCAA
LOC_Os10g09160
OsAffx.20701.2.S1_x_at--318--8331Chr10:4714306..4714330 (25 bp)
GGCTCGCCAATATTGAGCTGGCTCT
LOC_Os10g09160
OsAffx.20701.2.S1_x_at--128--1631Chr10:4714321..4714345 (25 bp)
AGCTGGCTCTTGCAAACCTTTTATT
LOC_Os10g09160
OsAffx.20701.2.S1_x_at--445--10271Chr10:4714350..4714374 (25 bp)
TTTGACTGGAGTCTTCCCGACGGAG
LOC_Os10g09160
OsAffx.20701.2.S1_x_at--670--4211Chr10:4714366..4714390 (25 bp)
CCGACGGAGTTCTACCCAGTGAATT
LOC_Os10g09160
Target Sequence 
TCCAACAGTGATGTCCAAGGCGCAAGACGAAGTTAGGGAGGTTTTCAAGTGGAAAAAGATGTTTGTTATTAAGGAGACTG
TACGGTTACATACCCCGGGGCCACTTTTCATGAGGGAGTGCCAGGAGCAATGTCAAGTGATGGGCTATGACGTGCCAAAG
GGTACAAAATTTCTACTAAATCTGTGGTCGATCTCAAGAGATCCGAAATATTGGGATGATCCAGAAACATTCAAACCTGA
GAGATTCGAGAATGATGCAAGAGATTTCAAAGGAAATGACTTTGAATTCATTCCATTTGGTGCTGGGAGAAGGATGTGCC
CTGGTATGTTGTTTGGGCTCGCCAATATTGAGCTGGCTCTTGCAAACCTTTTATTTTATTTTGACTGGAGTCTTCCCGAC
GGAGTTCTACCCAGTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20701.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis