Browse Element(s) Details


OsAffx.30353.2.S1_at

Description tigr:9638.m00787
TID=OsAffx.30353.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0915011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09110Os.46470.2.S1_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09110Os.46470.2.S1_x_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09110Os.46470.1.S1_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09130OsAffx.30352.1.S1_at11/1110+4703327..4705074hypothetical protein
LOC_Os10g09130Os.39421.1.S1_at3/1110+4703327..4705074hypothetical protein
LOC_Os10g09130OsAffx.20967.1.S1_x_at1/1110+4703327..4705074hypothetical protein
LOC_Os10g09140NANA10+4706608..4707878hypothetical protein
LOC_Os10g09150OsAffx.30353.2.S1_at11/1110+4711823..4712486hypothetical protein
LOC_Os10g09160OsAffx.20701.2.S1_x_at11/1110+4713009..4714478Cytochrome P450 family protein, expressed
LOC_Os10g09170OsAffx.30354.1.S1_at11/1110+4718106..4721329hypothetical protein
LOC_Os10g09180NANA10+4723294..4725385hypothetical protein
LOC_Os10g09190OsAffx.30355.1.S1_at11/1110+4727843..4728202hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_s_at11/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.38368.1.S1_s_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.10847.1.A1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_x_at9/1110+4732595..4736069hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30353.2.S1_at--110--2431Chr10:4711942..4711966 (25 bp)
AAAACTGTGTTAAGTCAGCTGAAAT
LOC_Os10g09150
OsAffx.30353.2.S1_at--344--2851Chr10:4711931..4711955 (25 bp)
AAGTCAGCTGAAATGGCTGCTTATC
LOC_Os10g09150
OsAffx.30353.2.S1_at--364--8331Chr10:4711917..4711941 (25 bp)
GGCTGCTTATCTCTGAGTTATTCCT
LOC_Os10g09150
OsAffx.30353.2.S1_at--1062--3851Chr10:4711905..4711929 (25 bp)
CTGAGTTATTCCTATTTTATGTCTG
LOC_Os10g09150
OsAffx.30353.2.S1_at--349--9251Chr10:4711896..4711920 (25 bp)
TCCTATTTTATGTCTGGTTATTGCT
LOC_Os10g09150
OsAffx.30353.2.S1_at--427--771Chr10:4711887..4711911 (25 bp)
ATGTCTGGTTATTGCTATTGGTTCT
LOC_Os10g09150
OsAffx.30353.2.S1_at--1149--7871Chr10:4711881..4711905 (25 bp)
GGTTATTGCTATTGGTTCTGACACG
LOC_Os10g09150
OsAffx.30353.2.S1_at--195--10231Chr10:4711878..4711902 (25 bp)
TATTGCTATTGGTTCTGACACGAGA
LOC_Os10g09150
OsAffx.30353.2.S1_at--1139--4871Chr10:4711874..4711898 (25 bp)
GCTATTGGTTCTGACACGAGAATTT
LOC_Os10g09150
OsAffx.30353.2.S1_at--1079--7891Chr10:4711868..4711892 (25 bp)
GGTTCTGACACGAGAATTTTGTAGA
LOC_Os10g09150
OsAffx.30353.2.S1_at--106--171Chr10:4711853..4711877 (25 bp)
ATTTTGTAGAGATACGAGTCTTTTG
LOC_Os10g09150
Target Sequence 
AAAACTGTGTTAAGTCAGCTGAAATGGCTGCTTATCTCTGAGTTATTCCTATTTTATGTCTGGTTATTGCTATTGGTTCT
GACACGAGAATTTTGTAGAGATACGAGTCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30353.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis