Browse Element(s) Details


OsAffx.30355.1.S1_at

Description gb:NM_195087.1
DB_XREF= gi:37531533
TID=OsAffx.30355.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0061H20.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0919011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09130OsAffx.30352.1.S1_at11/1110+4703327..4705074hypothetical protein
LOC_Os10g09130Os.39421.1.S1_at3/1110+4703327..4705074hypothetical protein
LOC_Os10g09130OsAffx.20967.1.S1_x_at1/1110+4703327..4705074hypothetical protein
LOC_Os10g09140NANA10+4706608..4707878hypothetical protein
LOC_Os10g09150OsAffx.30353.2.S1_at11/1110+4711823..4712486hypothetical protein
LOC_Os10g09160OsAffx.20701.2.S1_x_at11/1110+4713009..4714478Cytochrome P450 family protein, expressed
LOC_Os10g09170OsAffx.30354.1.S1_at11/1110+4718106..4721329hypothetical protein
LOC_Os10g09180NANA10+4723294..4725385hypothetical protein
LOC_Os10g09190OsAffx.30355.1.S1_at11/1110+4727843..4728202hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_s_at11/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.38368.1.S1_s_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.10847.1.A1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_x_at9/1110+4732595..4736069hypothetical protein
LOC_Os10g09210NANA10+4743050..4743730transposon protein, putative, unclassified
LOC_Os10g09220NANA10+4745977..4752638retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30355.1.S1_at--739--9151Chr10:4727884..4727908 (25 bp)
TGCGCAGTGCGTTCTTGTCGTCGGA
LOC_Os10g09190
OsAffx.30355.1.S1_at--682--9551Chr10:4727896..4727920 (25 bp)
TCTTGTCGTCGGAGGCATTCTTCTC
LOC_Os10g09190
OsAffx.30355.1.S1_at--456--7191Chr10:4727903..4727927 (25 bp)
GTCGGAGGCATTCTTCTCGCTCGAG
LOC_Os10g09190
OsAffx.30355.1.S1_at--224--7111Chr10:4727949..4727973 (25 bp)
GTCAGAGGCCGCTGCGGTTGCCATC
LOC_Os10g09190
OsAffx.30355.1.S1_at--34--10691Chr10:4727966..4727990 (25 bp)
TTGCCATCGGGAAGCGGTCGTCGCC
LOC_Os10g09190
OsAffx.30355.1.S1_at--965--4391Chr10:4727988..4728012 (25 bp)
GCCAGCTCCGGTTGTCGTCTAACGT
LOC_Os10g09190
OsAffx.30355.1.S1_at--779--7911Chr10:4727997..4728021 (25 bp)
GGTTGTCGTCTAACGTGCCCGCCGG
LOC_Os10g09190
OsAffx.30355.1.S1_at--362--4271Chr10:4728031..4728055 (25 bp)
CCGGCGACGGCAGTTACGTCGTGAA
LOC_Os10g09190
OsAffx.30355.1.S1_at--525--3951Chr10:4728050..4728074 (25 bp)
CGTGAAGATCGTGCCCGCCATTACG
LOC_Os10g09190
OsAffx.30355.1.S1_at--889--7691Chr10:4728079..4728103 (25 bp)
GGGTCACGGCGATTCTGCCCACTTG
LOC_Os10g09190
OsAffx.30355.1.S1_at--488--10731Chr10:4728120..4728144 (25 bp)
TTGCAATTCCAGACGTCTTCCTCGT
LOC_Os10g09190
Target Sequence 
TGCGCAGTGCGTTCTTGTCGTCGGAGGCATTCTTCTCGCTCGAGCCACAGTCCGCCAGGAGCACGGTCAGAGGCCGCTGC
GGTTGCCATCGGGAAGCGGTCGTCGCCAGCTCCGGTTGTCGTCTAACGTGCCCGCCGGGAATCAGCTCCGGCGACGGCAG
TTACGTCGTGAAGATCGTGCCCGCCATTACGTCTGGGGTCACGGCGATTCTGCCCACTTGCTCGGCGGCGGCGCCATTGC
AATTCCAGACGTCTTCCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis