Browse Element(s) Details


OsAffx.30354.1.S1_at

Description tigr:9638.m00790
TID=OsAffx.30354.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0917011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09110Os.46470.2.S1_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09110Os.46470.2.S1_x_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09110Os.46470.1.S1_at11/1110+4695326..4697230Cytochrome P450 family protein, expressed
LOC_Os10g09130OsAffx.30352.1.S1_at11/1110+4703327..4705074hypothetical protein
LOC_Os10g09130Os.39421.1.S1_at3/1110+4703327..4705074hypothetical protein
LOC_Os10g09130OsAffx.20967.1.S1_x_at1/1110+4703327..4705074hypothetical protein
LOC_Os10g09140NANA10+4706608..4707878hypothetical protein
LOC_Os10g09150OsAffx.30353.2.S1_at11/1110+4711823..4712486hypothetical protein
LOC_Os10g09160OsAffx.20701.2.S1_x_at11/1110+4713009..4714478Cytochrome P450 family protein, expressed
LOC_Os10g09170OsAffx.30354.1.S1_at11/1110+4718106..4721329hypothetical protein
LOC_Os10g09180NANA10+4723294..4725385hypothetical protein
LOC_Os10g09190OsAffx.30355.1.S1_at11/1110+4727843..4728202hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_s_at11/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.38368.1.S1_s_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200Os.10847.1.A1_at10/1110+4732595..4736069hypothetical protein
LOC_Os10g09200OsAffx.18185.1.S1_x_at9/1110+4732595..4736069hypothetical protein
LOC_Os10g09210NANA10+4743050..4743730transposon protein, putative, unclassified
LOC_Os10g09220NANA10+4745977..4752638retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30354.1.S1_at--561--751Chr10:4719620..4719644 (25 bp)
ATGTAGATGATGTAGCTCTGACGGT
LOC_Os10g09170
OsAffx.30354.1.S1_at--320--10011Chr10:4719608..4719632 (25 bp)
TAGCTCTGACGGTGATGTGGCCATC
LOC_Os10g09170
OsAffx.30354.1.S1_at--1149--6251Chr10:4719595..4719619 (25 bp)
GATGTGGCCATCTACGTTGATGAGA
LOC_Os10g09170
OsAffx.30354.1.S1_at--90--10191Chr10:4719564..4719588 (25 bp)
TATTTAAGCCCCTCCACTACATTAT
LOC_Os10g09170
OsAffx.30354.1.S1_at--1055--2011Chr10:4719549..4719573 (25 bp)
ACTACATTATGCCTCCAGATCGACT
LOC_Os10g09170
OsAffx.30354.1.S1_at--713--1991Chr10:4719527..4719551 (25 bp)
ACTCCCATCACGCTCGTGAAAGAGG
LOC_Os10g09170
OsAffx.30354.1.S1_at--709--1511Chr10:4718466..4718490 (25 bp)
AGCAGCGGTGATAGCGCCCTCCCGT
LOC_Os10g09170
OsAffx.30354.1.S1_at--568--9311Chr10:4718447..4718471 (25 bp)
TCCCGTCTGCCTGATGTAGCCAGAG
LOC_Os10g09170
OsAffx.30354.1.S1_at--340--10671Chr10:4718318..4718342 (25 bp)
TTCCTATCGATGCTCGGGCAACCAG
LOC_Os10g09170
OsAffx.30354.1.S1_at--1040--9091Chr10:4718308..4718332 (25 bp)
TGCTCGGGCAACCAGATCCGGCATG
LOC_Os10g09170
OsAffx.30354.1.S1_at--1101--8411Chr10:4718145..4718169 (25 bp)
GGCCGGAGGCTTCCACAAAGATGCA
LOC_Os10g09170
Target Sequence 
ATGTAGATGATGTAGCTCTGACGGTGATGTGGCCATCTACGTTGATGAGAATTTTGTATTTAAGCCCCTCCACTACATTA
TGCCTCCAGATCGACTCCCATCACGCTCGTGAAAGAGGGGGCAAAGGGGGTACCCGGAGGACAACAAAAGAAGGCGGCGG
CCGGCAGAGTGGCGGTGGCAGTGGCCCGGTGGAGGCGGCAGCAGCGGTGATAGCGCCCTCCCGTCTGCCTGATGTAGCCA
GAGGGGAGGCGGCGGACCTCGGCGGCTGCCGGGCAACGGCCCGGCGGAGGCGGCAGAGGCGTGGGAAGGCCACCGGCACC
GTCCCTCCTCCTCTTCGTCCCACCACCTTCCTATCGATGCTCGGGCAACCAGATCCGGCATGCCCCATCGCCACCGGCGC
TCAGGGACGGCCAAATCCGGCATCGCCCCTCCCCACTGGCGCTTGGGGGAGGCCAGATCCGGGGGTGGTGGTCGAGGAGG
CTGGGCACAGGGGACGTTGGCTGTGGTGGAGGCCGGGCGTGGCCGGAGGCTTCCACAAAGATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis